PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr5P13440_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family SBP
Protein Properties Length: 291aa    MW: 31824.2 Da    PI: 9.8327
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr5P13440_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP119.41.8e-3752130178
                            --SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSS.EEETTT--SS--S-STTTT-------S--- CS
                    SBP   1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsr.fhelsefDeekrsCrrrLakhnerrrkkqa 78 
                            +Cqv+gC++ l + keyh+rhkvCe hskap v+v g+eqrfCqqCsr fh +sefD++krsCrrrLa+hnerrrk+++
  GSMUA_Achr5P13440_001  52 RCQVDGCSKVLVDEKEYHKRHKVCELHSKAPRVVVLGVEQRFCQQCSRsFHVISEFDDSKRSCRRRLAGHNERRRKNSS 130
                            6**********************************************99***************************975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1100.101.9E-2948115IPR004333Transcription factor, SBP-box
PROSITE profilePS5114129.8850128IPR004333Transcription factor, SBP-box
SuperFamilySSF1036121.05E-3451132IPR004333Transcription factor, SBP-box
PfamPF031105.4E-2953127IPR004333Transcription factor, SBP-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 291 aa     Download sequence    Send to blast
MDASRGAAFV RTPRSMNLLV GYAETVAVSG QLRVPPVEGR PASVLRKGTA PRCQVDGCSK  60
VLVDEKEYHK RHKVCELHSK APRVVVLGVE QRFCQQCSRS FHVISEFDDS KRSCRRRLAG  120
HNERRRKNSS EPITRNPALG SAIIGGMAPY LSASPGCALS LLSSKASPWI ATSDFSSRSS  180
AALNELIAEN RAAVLARQLL ADGSGWHAMV SVKQQQPPVF WSHIQHQATP QPMPPHADGW  240
SRLQGAGGHV TLDLMQMPDS FEIVSGRRSK SKEDDEESSE IWKSLAGTHV V
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ul4_A7e-29531271184squamosa promoter binding protein-like 4
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTrans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3' (By similarity). May be involved in panicle development. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009400684.11e-175PREDICTED: squamosa promoter-binding-like protein 7
SwissprotQ01JD14e-60SPL7_ORYSI; Squamosa promoter-binding-like protein 7
TrEMBLM0SY730.0M0SY73_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr5P13440_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP103033439
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69170.14e-35SBP family protein