PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr5P13370_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family C2H2
Protein Properties Length: 296aa    MW: 32092.6 Da    PI: 8.1231
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr5P13370_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H211.40.00099426123
                           EEETTTTEEESSHHHHHHHHHHT CS
                zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                           ++C+ C ++Fs+   L  H+r+H
  GSMUA_Achr5P13370_001  4 HTCNLCFRRFSNGRALGGHMRSH 26
                           79********************9 PP
2zf-C2H2130.0003221243123
                            EEETTTTEEESSHHHHHHHHHHT CS
                zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                            ++Cp C ++Fs+   L +H r+H
  GSMUA_Achr5P13370_001 221 HECPLCFRVFSSGQALGSHKRSH 243
                            78*******************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF139124.8E-5326IPR007087Zinc finger, C2H2
SuperFamilySSF576674.72E-8326No hitNo description
PROSITE profilePS501579.245426IPR007087Zinc finger, C2H2
SMARTSM003550.12426IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280626IPR007087Zinc finger, C2H2
SuperFamilySSF576674.72E-8164191No hitNo description
PfamPF139124.4E-11168193IPR007087Zinc finger, C2H2
PROSITE profilePS501579.806169196IPR007087Zinc finger, C2H2
SMARTSM003550.035169191IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280171191IPR007087Zinc finger, C2H2
SuperFamilySSF576675.22E-5218248No hitNo description
PfamPF139123.2E-10220244IPR007087Zinc finger, C2H2
PROSITE profilePS5015710.783221248IPR007087Zinc finger, C2H2
SMARTSM003550.11221243IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280223243IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 296 aa     Download sequence    Send to blast
MDRHTCNLCF RRFSNGRALG GHMRSHFIAA APLARPRSHG YSSDSTSSAQ RAAERAFSSS  60
TFAAVEAAGS CDVVQDGESE TESPRGQRLP TKRPCRATAP PLDQPEGEPM SSVSDATPEE  120
DIALCLMMLS RDSWTATVED RPLDGSDDED TRRPAARSRP PPRKGRSRYQ CSACKKVFRS  180
YQALGGHRAS HKRTNGCRPV TEPRINSEAD SVDANADAKV HECPLCFRVF SSGQALGSHK  240
RSHLTTSPVP ATTKHGGNFG LIDLNLPAPE EDDAELSAVE STQSVPTQPA RRKHAI
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009400680.20.0PREDICTED: zinc finger protein ZAT9-like
TrEMBLM0SY660.0M0SY66_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr5P13370_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP11214410
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G60580.15e-51C2H2-like zinc finger protein