PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSMUA_Achr5P12230_001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
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Family | MYB | ||||||||
Protein Properties | Length: 255aa MW: 27874.2 Da PI: 6.362 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 56.6 | 5.8e-18 | 14 | 61 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+eEd++lvd ++ +G g+W++ ++ g+ R++k+c++rw +yl GSMUA_Achr5P12230_001 14 KGPWTPEEDKILVDFIQSHGHGSWRSLPKLAGLLRCGKSCRLRWTNYL 61 79******************************99************97 PP | |||||||
2 | Myb_DNA-binding | 58.7 | 1.3e-18 | 67 | 112 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg++T+eEd+ ++++++ lG++ W++Ia+ ++ gRt++++k++w+++l GSMUA_Achr5P12230_001 67 RGPFTPEEDKSIIQLHAILGNK-WSAIAAQLP-GRTDNEVKNYWNTHL 112 89********************.*********.************996 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 1.9E-24 | 5 | 63 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 16.888 | 9 | 61 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 4.58E-32 | 11 | 108 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.1E-13 | 13 | 63 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 3.2E-16 | 14 | 61 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.98E-11 | 16 | 61 | No hit | No description |
PROSITE profile | PS51294 | 27.204 | 62 | 116 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 3.1E-29 | 64 | 118 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 2.5E-17 | 66 | 114 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 2.0E-17 | 67 | 112 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 2.56E-13 | 69 | 112 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 255 aa Download sequence Send to blast |
MGRSPCCDKQ GLKKGPWTPE EDKILVDFIQ SHGHGSWRSL PKLAGLLRCG KSCRLRWTNY 60 LRPDIKRGPF TPEEDKSIIQ LHAILGNKWS AIAAQLPGRT DNEVKNYWNT HLKKRLLWES 120 ARLEAEARLS RESFLFSSST TAAASSAAPF AGAVGAAFRR RSPDCASTRS SAPAREEAES 180 KSCVTVGHPA AAAAAAAGMD VDSIGSNEVA EETEDEEAYQ LYLDFPGDDL GLFTVQLSSL 240 FSADLNEAYF DTAFK |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 3e-30 | 12 | 116 | 5 | 108 | B-MYB |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that may play a role in flower development by repressing ANT (PubMed:19232308). Regulates the transition of meristem identity from vegetative growth to flowering. Acts downstream of LFY and upstream of AP1. Directly activates AP1 to promote floral fate. Together with LFY and AP1 may constitute a regulatory network that contributes to an abrupt and robust meristem identity transition (PubMed:21750030). {ECO:0000269|PubMed:19232308, ECO:0000269|PubMed:21750030}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009400270.1 | 1e-152 | PREDICTED: myb-related protein Hv1-like isoform X2 | ||||
Refseq | XP_009400271.1 | 1e-152 | PREDICTED: myb-related protein Hv1-like isoform X2 | ||||
Refseq | XP_018682018.1 | 1e-151 | PREDICTED: myb-related protein 306-like isoform X1 | ||||
Swissprot | Q9M2D9 | 4e-84 | MYB17_ARATH; Transcription factor MYB17 | ||||
TrEMBL | M0SXV2 | 0.0 | M0SXV2_MUSAM; Uncharacterized protein | ||||
STRING | GSMUA_Achr5P12230_001 | 0.0 | (Musa acuminata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP5409 | 31 | 57 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G61250.1 | 1e-73 | myb domain protein 17 |