PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr5P12230_001
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family MYB
Protein Properties Length: 255aa    MW: 27874.2 Da    PI: 6.362
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr5P12230_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding56.65.8e-181461148
                           TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
        Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                           +g+WT+eEd++lvd ++ +G g+W++ ++  g+ R++k+c++rw +yl
  GSMUA_Achr5P12230_001 14 KGPWTPEEDKILVDFIQSHGHGSWRSLPKLAGLLRCGKSCRLRWTNYL 61
                           79******************************99************97 PP

2Myb_DNA-binding58.71.3e-1867112148
                            TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
        Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                            rg++T+eEd+ ++++++ lG++ W++Ia+ ++ gRt++++k++w+++l
  GSMUA_Achr5P12230_001  67 RGPFTPEEDKSIIQLHAILGNK-WSAIAAQLP-GRTDNEVKNYWNTHL 112
                            89********************.*********.************996 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.9E-24563IPR009057Homeodomain-like
PROSITE profilePS5129416.888961IPR017930Myb domain
SuperFamilySSF466894.58E-3211108IPR009057Homeodomain-like
SMARTSM007171.1E-131363IPR001005SANT/Myb domain
PfamPF002493.2E-161461IPR001005SANT/Myb domain
CDDcd001671.98E-111661No hitNo description
PROSITE profilePS5129427.20462116IPR017930Myb domain
Gene3DG3DSA:1.10.10.603.1E-2964118IPR009057Homeodomain-like
SMARTSM007172.5E-1766114IPR001005SANT/Myb domain
PfamPF002492.0E-1767112IPR001005SANT/Myb domain
CDDcd001672.56E-1369112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 255 aa     Download sequence    Send to blast
MGRSPCCDKQ GLKKGPWTPE EDKILVDFIQ SHGHGSWRSL PKLAGLLRCG KSCRLRWTNY  60
LRPDIKRGPF TPEEDKSIIQ LHAILGNKWS AIAAQLPGRT DNEVKNYWNT HLKKRLLWES  120
ARLEAEARLS RESFLFSSST TAAASSAAPF AGAVGAAFRR RSPDCASTRS SAPAREEAES  180
KSCVTVGHPA AAAAAAAGMD VDSIGSNEVA EETEDEEAYQ LYLDFPGDDL GLFTVQLSSL  240
FSADLNEAYF DTAFK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A3e-30121165108B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that may play a role in flower development by repressing ANT (PubMed:19232308). Regulates the transition of meristem identity from vegetative growth to flowering. Acts downstream of LFY and upstream of AP1. Directly activates AP1 to promote floral fate. Together with LFY and AP1 may constitute a regulatory network that contributes to an abrupt and robust meristem identity transition (PubMed:21750030). {ECO:0000269|PubMed:19232308, ECO:0000269|PubMed:21750030}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009400270.11e-152PREDICTED: myb-related protein Hv1-like isoform X2
RefseqXP_009400271.11e-152PREDICTED: myb-related protein Hv1-like isoform X2
RefseqXP_018682018.11e-151PREDICTED: myb-related protein 306-like isoform X1
SwissprotQ9M2D94e-84MYB17_ARATH; Transcription factor MYB17
TrEMBLM0SXV20.0M0SXV2_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr5P12230_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP54093157
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G61250.11e-73myb domain protein 17