PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSMUA_Achr5P11330_001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
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Family | LBD | ||||||||
Protein Properties | Length: 241aa MW: 24691.1 Da PI: 7.8432 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 130.2 | 9.1e-41 | 38 | 138 | 1 | 100 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqql 87 +C aCk+lrrkC+++C++apyf +eq +++fa+vhk+FGasnv+kll ++p ++r da+ +++yeA+ar+rdPvyG+v++i++lqqq+ GSMUA_Achr5P11330_001 38 PCGACKFLRRKCVTGCIFAPYFDSEQgAAHFAAVHKVFGASNVSKLLLHIPAHKRLDAVVTICYEAQARLRDPVYGCVAHIFALQQQV 125 7***********************9989************************************************************ PP DUF260 88 eqlkaelallkee 100 +l+ael++l+++ GSMUA_Achr5P11330_001 126 VNLQAELSYLQAH 138 ********99986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 23.084 | 37 | 139 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 1.2E-39 | 38 | 136 | IPR004883 | Lateral organ boundaries, LOB |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0010089 | Biological Process | xylem development | ||||
GO:0010199 | Biological Process | organ boundary specification between lateral organs and the meristem |
Sequence ? help Back to Top |
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Protein Sequence Length: 241 aa Download sequence Send to blast |
MSGKSPSVGV LGGGSGGAGG GGGGGSGGGG SAGGGTGPCG ACKFLRRKCV TGCIFAPYFD 60 SEQGAAHFAA VHKVFGASNV SKLLLHIPAH KRLDAVVTIC YEAQARLRDP VYGCVAHIFA 120 LQQQVVNLQA ELSYLQAHLA TLELPSPPPP PPPPSLVASM PFSISDLPSA ANLPSTVDLS 180 ALFDPLVQPL WPLQQQQLQL STSTRNLSES SGFGGGDLQA LARELLDRQR TATSEPPPVS 240 K |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 8e-37 | 34 | 139 | 7 | 111 | LOB family transfactor Ramosa2.1 |
5ly0_B | 8e-37 | 34 | 139 | 7 | 111 | LOB family transfactor Ramosa2.1 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 14 | 30 | SGGAGGGGGGGSGGGGS |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Involved in the positive regulation of tracheary element (TE) differentiation. Involved in a positive feedback loop that maintains or promotes NAC030/VND7 expression that regulates TE differentiation-related genes. {ECO:0000269|PubMed:19088331}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009400358.1 | 1e-172 | PREDICTED: LOB domain-containing protein 18-like | ||||
Swissprot | O81323 | 9e-76 | LBD30_ARATH; LOB domain-containing protein 30 | ||||
TrEMBL | M0SXL2 | 1e-171 | M0SXL2_MUSAM; Uncharacterized protein | ||||
STRING | GSMUA_Achr5P11330_001 | 1e-172 | (Musa acuminata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP3346 | 37 | 82 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G45420.1 | 4e-74 | LOB domain-containing protein 18 |
Publications ? help Back to Top | |||
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