PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSMUA_Achr5P11080_001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
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Family | WOX | ||||||||
Protein Properties | Length: 220aa MW: 24177.2 Da PI: 8.9503 | ||||||||
Description | WOX family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 62.5 | 6.3e-20 | 76 | 136 | 2 | 57 |
T--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 2 rkRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 r+R+t+t+ ql++Le+lF++ +ps+++++e+ ++l +++e++V++WFqNrRa+ k+ GSMUA_Achr5P11080_001 76 RQRWTPTHMQLQTLESLFYQgIGTPSKQRIKEIVAELsqhgQISEANVYNWFQNRRARSKR 136 89*****************99**************************************97 PP | |||||||
2 | Wus_type_Homeobox | 99.3 | 2.9e-32 | 75 | 138 | 2 | 65 |
Wus_type_Homeobox 2 artRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65 ar+RWtPt+ Q++ Le+l+++G+ tP+k++i++i aeL+++G+i+++NV++WFQNr+aR+++k+ GSMUA_Achr5P11080_001 75 ARQRWTPTHMQLQTLESLFYQGIGTPSKQRIKEIVAELSQHGQISEANVYNWFQNRRARSKRKK 138 689***********************************************************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50071 | 14.188 | 72 | 137 | IPR001356 | Homeobox domain |
Gene3D | G3DSA:1.10.10.60 | 2.3E-15 | 73 | 141 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 3.68E-17 | 74 | 138 | IPR009057 | Homeodomain-like |
SMART | SM00389 | 7.7E-13 | 74 | 141 | IPR001356 | Homeobox domain |
CDD | cd00086 | 4.38E-13 | 76 | 138 | No hit | No description |
Pfam | PF00046 | 9.5E-18 | 76 | 136 | IPR001356 | Homeobox domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 220 aa Download sequence Send to blast |
MEEGMAAQGA SCVQVMTDEQ MELLRRQISA YAVICERLVE MHRAVSAQQD AFSGMKLSGL 60 YNDPLVTYGG PKISARQRWT PTHMQLQTLE SLFYQGIGTP SKQRIKEIVA ELSQHGQISE 120 ANVYNWFQNR RARSKRKKTA AAPSNTESES EAKSLVEKKA KTAMAAAYSN LSPSVYDHSP 180 ASNGSQGMYD YEAPESSKLS GGSDGMPVYG ISISTPRKQP |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor which may be involved in developmental processes. {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009400621.2 | 1e-163 | PREDICTED: WUSCHEL-related homeobox 8-like | ||||
Swissprot | Q5QMM3 | 2e-67 | WOX8_ORYSJ; WUSCHEL-related homeobox 8 | ||||
TrEMBL | M0SXI7 | 1e-163 | M0SXI7_MUSAM; Uncharacterized protein | ||||
STRING | GSMUA_Achr5P11080_001 | 1e-163 | (Musa acuminata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP3898 | 37 | 76 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G35550.1 | 4e-52 | WUSCHEL related homeobox 13 |
Publications ? help Back to Top | |||
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