PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSMUA_Achr5P10740_001

Organism

Musa acuminata

Taxonomic ID

4641

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa

Family

LBD

Protein Properties

Length: 800aa MW: 88950.9 Da PI: 5.9545

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSMUA_Achr5P10740_001	genome	CIRAD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	114.3	7.8e-36	681	777	1	97
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqle 88 +CaaCk lrr+C++dC++ pyfp+++p+kfa+vh++FG sn +kll+++p+e eda+ s+vyeA+ar+rdPvyG+v+ + +lq + + GSMUA_Achr5P10740_001 681 PCAACKQLRRRCSDDCIFIPYFPSTEPEKFAAVHRIFGESNASKLLQDIPPELGEDAVISMVYEANARLRDPVYGCVASVAALQLHAS 768 7************************************************************************************* PP DUF260 89 qlkaelall 97 ql++ela++ GSMUA_Achr5P10740_001 769 QLQQELASA 777 ***9976 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF08263	7.5E-9	10	46	IPR013210	Leucine-rich repeat-containing N-terminal, plant-type
Gene3D	G3DSA:3.80.10.10	7.3E-41	10	211	IPR032675	Leucine-rich repeat domain, L domain-like
SuperFamily	SSF52058	6.38E-33	11	208	IPR032675	Leucine-rich repeat domain, L domain-like
SuperFamily	SSF56112	1.11E-39	313	605	IPR011009	Protein kinase-like domain
Gene3D	G3DSA:3.30.200.20	1.9E-12	318	400	No hit	No description
PROSITE profile	PS50011	18.224	333	609	IPR000719	Protein kinase domain
Pfam	PF07714	1.2E-17	336	603	IPR001245	Serine-threonine/tyrosine-protein kinase catalytic domain
Gene3D	G3DSA:1.10.510.10	3.3E-21	401	603	No hit	No description
PROSITE profile	PS50891	23.178	680	781	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	1.3E-36	681	777	IPR004883	Lateral organ boundaries, LOB

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006468	Biological Process	protein phosphorylation
GO:0004672	Molecular Function	protein kinase activity
GO:0005524	Molecular Function	ATP binding

Sequence ? help Back to Top
Protein Sequence Length: 800 aa Download sequence Send to blast
MEFLETFTVT ALEAFRKAIY EDPLSRLSDW NPQDPNPCNW TGIKCSSPPQ NIVISINLSS 60 SSLKGFLAPQ LGSLQWLQEL VLDNNLLMGT IPYQLSTLTN LIMLNLSVNE LSGPIPPEIG 120 NLTSITKIDL HSNRLNGYIP PELGDLTKLF ELRLDRNKLS GVIPVSNVSN MLASQEKGSG 180 LCQLTHLGVG DFSYNFLVGK IPSCLDYLPR SNFQGNCFDV DGSVFQRSAQ QCSSVNILDS 240 DGDSKRNYPE RLKHKKPSQP FWLLILEIAT GVLVLVFLIT CMATACNRCK RKSYLLSWRK 300 IPSWNDHTAL SIDPDLLKNV LRISYQEIEA ACEDFSNVIG SSLYNLVYKG TMKNGPEIAV 360 ISLCISGDQW TSSHELYFQT EVATQSKIIH ENTAKFLGYC QEGDPFSRML VFEYASNGTL 420 YEHIHYGDGC QLSWLRRTKI AIGIARGLRY LHTELQPPFT IAELTSSTVY LTEDFSPKLV 480 DFERWKNIFL KSRMHSGYVT SGGSLNGSVD SLKSQFLDVQ GNIYAFGVIL LELISGRPAY 540 CKERGSLLDW AMKYLDNPEE RGKLVDPQLK KVKPEDLAII CNVISLCLEP EPSKRPSMQI 600 IAALLEDGID VTVNAMLKDY PLAWAELAPK KLLQLDLHYC NPLNPAVSGF LYPAAASSYV 660 DQVPSSQVGR GEASRSRSRA PCAACKQLRR RCSDDCIFIP YFPSTEPEKF AAVHRIFGES 720 NASKLLQDIP PELGEDAVIS MVYEANARLR DPVYGCVASV AALQLHASQL QQELASALNT 780 TSNQLSELLS LLSYMNTSCS

Sequence ? help Back to Top

Protein Sequence Length: 800 aa Download sequence Send to blast

MEFLETFTVT ALEAFRKAIY EDPLSRLSDW NPQDPNPCNW TGIKCSSPPQ NIVISINLSS  60
SSLKGFLAPQ LGSLQWLQEL VLDNNLLMGT IPYQLSTLTN LIMLNLSVNE LSGPIPPEIG  120
NLTSITKIDL HSNRLNGYIP PELGDLTKLF ELRLDRNKLS GVIPVSNVSN MLASQEKGSG  180
LCQLTHLGVG DFSYNFLVGK IPSCLDYLPR SNFQGNCFDV DGSVFQRSAQ QCSSVNILDS  240
DGDSKRNYPE RLKHKKPSQP FWLLILEIAT GVLVLVFLIT CMATACNRCK RKSYLLSWRK  300
IPSWNDHTAL SIDPDLLKNV LRISYQEIEA ACEDFSNVIG SSLYNLVYKG TMKNGPEIAV  360
ISLCISGDQW TSSHELYFQT EVATQSKIIH ENTAKFLGYC QEGDPFSRML VFEYASNGTL  420
YEHIHYGDGC QLSWLRRTKI AIGIARGLRY LHTELQPPFT IAELTSSTVY LTEDFSPKLV  480
DFERWKNIFL KSRMHSGYVT SGGSLNGSVD SLKSQFLDVQ GNIYAFGVIL LELISGRPAY  540
CKERGSLLDW AMKYLDNPEE RGKLVDPQLK KVKPEDLAII CNVISLCLEP EPSKRPSMQI  600
IAALLEDGID VTVNAMLKDY PLAWAELAPK KLLQLDLHYC NPLNPAVSGF LYPAAASSYV  660
DQVPSSQVGR GEASRSRSRA PCAACKQLRR RCSDDCIFIP YFPSTEPEKF AAVHRIFGES  720
NASKLLQDIP PELGEDAVIS MVYEANARLR DPVYGCVASV AALQLHASQL QQELASALNT  780
TSNQLSELLS LLSYMNTSCS

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6cpy_A	2e-58	304	607	13	302	GRMZM2G135359 pseudokinase
6cpy_B	2e-58	304	607	13	302	GRMZM2G135359 pseudokinase
6eas_A	2e-58	304	607	13	302	drought responsive inactive kinase 1
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009400419.1	0.0	PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At1g63430
Refseq	XP_018681368.1	0.0	PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At1g63430
Swissprot	C0LGH8	0.0	Y1634_ARATH; Probable LRR receptor-like serine/threonine-protein kinase At1g63430
TrEMBL	M0SXF3	0.0	M0SXF3_MUSAM; Uncharacterized protein
STRING	GSMUA_Achr5P10740_001	0.0	(Musa acuminata)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G31320.1	1e-30	LOB domain-containing protein 4

Publications ? help Back to Top
Gou X, et al. Genome-wide cloning and sequence analysis of leucine-rich repeat receptor-like protein kinase genes in Arabidopsis thaliana. BMC Genomics, 2010. 11: p. 19 [PMID:20064227]