PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr5P10690_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family MYB
Protein Properties Length: 279aa    MW: 31677.9 Da    PI: 9.4846
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr5P10690_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding50.74.2e-161462148
                           TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHTTTS-HHHHHHHHHHHT CS
        Myb_DNA-binding  1 rgrWTteEdellvdavkqlGgg.tWktIartmgkgRtlkqcksrwqkyl 48
                           +g+W++eEd +l++ ++++G+g +W + +++ g++R++k+c++rw++yl
  GSMUA_Achr5P10690_001 14 KGPWSPEEDTKLKEFIEKYGTGgNWIALPHKAGLRRCGKSCRLRWLNYL 62
                           79*********************************************97 PP
2Myb_DNA-binding331.4e-1069111246
                            SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
        Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                            g +++eEd  +   ++  G++ W+  a+ ++ gRt++++k++w++
  GSMUA_Achr5P10690_001  69 GEFSEEEDRVICSIFAAIGSR-WSIMASQLP-GRTDNDIKNYWNT 111
                            789******************.*********.***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129420.945966IPR017930Myb domain
SuperFamilySSF466895.72E-2711109IPR009057Homeodomain-like
SMARTSM007171.0E-121364IPR001005SANT/Myb domain
PfamPF002492.6E-151462IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.0E-231569IPR009057Homeodomain-like
CDDcd001671.88E-91662No hitNo description
SMARTSM007175.0E-1067115IPR001005SANT/Myb domain
PROSITE profilePS5129414.20267117IPR017930Myb domain
PfamPF002492.1E-969111IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.6E-2270117IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 279 aa     Download sequence    Send to blast
MGRTPCCDKA NVKKGPWSPE EDTKLKEFIE KYGTGGNWIA LPHKAGLRRC GKSCRLRWLN  60
YLRPNIKHGE FSEEEDRVIC SIFAAIGSRW SIMASQLPGR TDNDIKNYWN TKLKKKLLGI  120
TPFQRKPHRR NNHHHQNQHF SPSPSSSSQG AGSESFPIIS QVMPRSTPVI SSDFFQVPYH  180
QYQMKSSSNM NTVSIIKDLN YGYGGGEEQM SIHKESKLFL LGGGCQVETG LEYSLEEIKQ  240
LLISNSVCNN NNHNLYLDHP IANGKMENSK LQHAPDFRL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A1e-27111174108B-MYB
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009400425.10.0PREDICTED: transcription factor MYB36-like
TrEMBLM0SXE80.0M0SXE8_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr5P10690_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP13538412
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G57620.12e-76myb domain protein 36