PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr5P10280_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family MYB_related
Protein Properties Length: 272aa    MW: 29862.1 Da    PI: 9.412
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr5P10280_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding42.81.2e-133276147
                           TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
        Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                           r +WT++E++++++a +++  + Wk+I + +g  +t  q++s+ qky
  GSMUA_Achr5P10280_001 32 RESWTEQEHDKFLEALQLFDRD-WKKIEAFVG-SKTVIQIRSHAQKY 76
                           789*****************77.*********.*************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466897.48E-172682IPR009057Homeodomain-like
PROSITE profilePS5129415.4082781IPR017930Myb domain
Gene3DG3DSA:1.10.10.608.4E-73082IPR009057Homeodomain-like
TIGRFAMsTIGR015571.1E-183079IPR006447Myb domain, plants
SMARTSM007175.3E-113179IPR001005SANT/Myb domain
PfamPF002492.0E-113276IPR001005SANT/Myb domain
CDDcd001671.27E-83477No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 272 aa     Download sequence    Send to blast
MSLTGPVSSP AGTLSDEAAK KIRKPYTITK SRESWTEQEH DKFLEALQLF DRDWKKIEAF  60
VGSKTVIQIR SHAQKYFLKV QKNGNGAHVP PPRPKRKAAH PYPQKASKNG IAAPPLARPI  120
PLQTSFLLER GYALGTDSSS KLRNSTTEGI KSGGAIVVDN CCSSSTGSPR GSLPNCEKNC  180
QGNQVPSLRV MPDFIQVYNF LGSVFDPSTS CHLQKLREMD PLDVETVLLL MRNLSINLTS  240
PDFEDHIKLL STHGSDLVEP KPASVDNLLI AN
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3606966e-75AK360696.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1123J21.
GenBankAK3694126e-75AK369412.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2090M12.
GenBankAK3769566e-75AK376956.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv3144K07.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018681310.10.0PREDICTED: protein REVEILLE 6-like isoform X1
SwissprotQ8H0W32e-93RVE6_ARATH; Protein REVEILLE 6
TrEMBLM0SXA70.0M0SXA7_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr5P10280_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP109638111
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G52660.12e-83MYB_related family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Gray JA,Shalit-Kaneh A,Chu DN,Hsu PY,Harmer SL
    The REVEILLE Clock Genes Inhibit Growth of Juvenile and Adult Plants by Control of Cell Size.
    Plant Physiol., 2017. 173(4): p. 2308-2322
    [PMID:28254761]