PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr5P09730_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family WRKY
Protein Properties Length: 712aa    MW: 77287.7 Da    PI: 6.3848
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr5P09730_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY91.75.5e-293290259
                           --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
                   WRKY  2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59
                           +Dg++WrKYGqK+ kg+++pr+YYrCt a gCpv+k+v+r+ ed ++++ tYeg+Hnh+
  GSMUA_Achr5P09730_001 32 SDGCHWRKYGQKVAKGNPCPRAYYRCTVApGCPVRKQVQRCVEDLSILISTYEGTHNHP 90
                           7***************************99****************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.807.4E-311792IPR003657WRKY domain
SuperFamilySSF1182902.35E-262492IPR003657WRKY domain
PROSITE profilePS5081128.7822692IPR003657WRKY domain
SMARTSM007749.6E-353191IPR003657WRKY domain
PfamPF031062.7E-253390IPR003657WRKY domain
Gene3DG3DSA:3.10.350.101.6E-5651690IPR018392LysM domain
CDDcd001189.13E-7651690No hitNo description
PfamPF014768.4E-9651690IPR018392LysM domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 712 aa     Download sequence    Send to blast
MPRNEDEEVS PQHTLKRARV SVRARCDAPT MSDGCHWRKY GQKVAKGNPC PRAYYRCTVA  60
PGCPVRKQVQ RCVEDLSILI STYEGTHNHP LPISATAMAS TTSAAAGMLM SGSTSSTSIT  120
SDIHGGSIGT SNNSMPQRSL TDMIAGAITS HPSFQSALAA AVTSYIGGAR GAQGAREGSI  180
YDLQRQEQLA SPPTHAAAAI SNEESQVWEG TEESHMLNPC ILPELLKRSD ERECDEPGFM  240
VIGNVNQLHK KLSITFLIHK MEDPDSIFLS LSTLESEEFE SPDIPGKPSK QLSHEAIKSN  300
HKMASLKSMS RSLVAVPESV ASEFLSMLGK EDSLFGLSSD SDPDLLREQL WKQFEKESLA  360
SCDDLFVPLT WVGSNCSLEE PLELPALVEG LGPIVQTKDG GFLRSMNPSL FRDAENNGTL  420
IMQVSGLIVV PAEMGSGIME ILQQLASMGI EKLSRQASKL MPLEDLTGKT SQRIAWDSAT  480
ALDSCERSGN FVIWGLGASQ NVDGRREKSK GMTLACSSKV GKDPVGTSCH ANACLLALIQ  540
VERVFVPPKP KIYSTVSAKG NSEQEDEVET ESKPSAKAEN HEEEVIRQFK ITEVHVAGLK  600
TESSKINVPG NPKQQQSGSR WLLATGIGKS NKHPFMKSRT VAKPSKEMSA KVQPGDTLWS  660
ISSRIHDSGA KWTELAALNP HIRNPDIIFP TVPHEVNLCL TRSLPCFDVV TL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A1e-201892174WRKY transcription factor 1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009382993.16e-79PREDICTED: protein PLASTID MOVEMENT IMPAIRED 1-RELATED 1
TrEMBLM0SX520.0M0SX52_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr5P09730_0010.0(Musa acuminata)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G15130.15e-46WRKY DNA-binding protein 72