PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSMUA_Achr5P09280_001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
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Family | MYB | ||||||||
Protein Properties | Length: 192aa MW: 21622.1 Da PI: 10.5398 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 48.9 | 1.5e-15 | 14 | 62 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGgg.tWktIartmgkgRtlkqcksrwqkyl 48 rg+W++eEd l+ +++++G+g +W + +++ g++R++k+c++rw++yl GSMUA_Achr5P09280_001 14 RGPWSPEEDATLKIYIEKHGTGgNWIALPQKAGLKRCGKSCRLRWLNYL 62 89*********************************************97 PP | |||||||
2 | Myb_DNA-binding | 48.4 | 2.1e-15 | 69 | 111 | 2 | 46 |
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 g++T+eEd ++ ++++ G++ W+ Ia+ m+ gRt++++k++w++ GSMUA_Achr5P09280_001 69 GAFTEEEDTIICTLHNRIGSR-WSIIASQMP-GRTDNDVKNYWNT 111 89*******************.*********.***********97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 14.039 | 9 | 62 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 2.62E-29 | 11 | 109 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 2.3E-10 | 13 | 64 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.0E-14 | 14 | 62 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.2E-24 | 15 | 69 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 3.92E-8 | 16 | 62 | No hit | No description |
PROSITE profile | PS51294 | 23.111 | 63 | 117 | IPR017930 | Myb domain |
SMART | SM00717 | 1.2E-13 | 67 | 115 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 6.4E-14 | 69 | 111 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 2.90E-10 | 70 | 113 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 7.2E-25 | 70 | 117 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 192 aa Download sequence Send to blast |
MGRAPCCDKA NVKRGPWSPE EDATLKIYIE KHGTGGNWIA LPQKAGLKRC GKSCRLRWLN 60 YLRPDIKHGA FTEEEDTIIC TLHNRIGSRW SIIASQMPGR TDNDVKNYWN TKLKKKLMLR 120 HANLSAPATS SGAMSARRTS ASPTRPSCGL LPRPMHRGCT KHLTIHCISR AGLCPPLYAF 180 LDRDNNVFHR FL |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 9e-26 | 14 | 117 | 7 | 108 | B-MYB |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factors that activates genes required for endodermal differentiation but represses genes involved in proliferative divisions, thus regulating the transition from proliferation to differentiation in root endodermis (PubMed:26371322). Required for Casparian strip formation by positively regulating the expression of the Casparian strip genes CASP1, PER64 and ESB1 and other endodermis-specific genes, thus triggering correct localized lignin biosynthesis in root endodermis and subsequently regulating global ion homeostasis (PubMed:26124109, PubMed:26371322). {ECO:0000269|PubMed:26124109, ECO:0000269|PubMed:26371322}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Directly up-regulated by SCARECROW (SCR), as part of the differentiation program controlled by SHORT-ROOT (SHR). {ECO:0000269|PubMed:24517883, ECO:0000269|PubMed:26371322}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009400575.1 | 5e-89 | PREDICTED: transcription factor RAX1-like | ||||
Swissprot | Q9FKL2 | 6e-72 | MYB36_ARATH; Transcription factor MYB36 | ||||
TrEMBL | M0SX07 | 1e-141 | M0SX07_MUSAM; Uncharacterized protein | ||||
STRING | GSMUA_Achr5P09280_001 | 1e-142 | (Musa acuminata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP135 | 38 | 412 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G57620.1 | 3e-74 | myb domain protein 36 |
Publications ? help Back to Top | |||
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