PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSMUA_Achr5P09160_001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
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Family | Trihelix | ||||||||
Protein Properties | Length: 252aa MW: 28157.1 Da PI: 10.6911 | ||||||||
Description | Trihelix family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | trihelix | 52.5 | 1.3e-16 | 22 | 110 | 1 | 87 |
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm.....rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfd 83 +W++ e+ aL++a ++ +l+rg+l++++W+ev++++ + r r+ +qCk++++ l+k+yk +k++ ++ +s++p+f+ GSMUA_Achr5P09160_001 22 CWSEGETSALVDAWGDRYVELNRGNLRQKQWQEVADAVnsrsgAGRRPPRTDVQCKNRIDTLKKKYKVEKARIAGG---GESQWPFFS 106 7*************************************98776666668899*********************996...5669***** PP trihelix 84 qlea 87 +lea GSMUA_Achr5P09160_001 107 RLEA 110 *985 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF13837 | 4.1E-28 | 20 | 111 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 8.3E-4 | 22 | 89 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 252 aa Download sequence Send to blast |
MDKREAASTR PPNPALPYRE DCWSEGETSA LVDAWGDRYV ELNRGNLRQK QWQEVADAVN 60 SRSGAGRRPP RTDVQCKNRI DTLKKKYKVE KARIAGGGES QWPFFSRLEA LVGSAPPPAA 120 KKPSASPPLA LPLPSHRKGS ALPAALALRP AEPREKRTAA ATSSSSRSGK KPKRGREGEG 180 NGIRELARAI MSFAEIYERV EESKQRQMME LEKQRMEFAK ALEFQKMQII VDLQVQLAKI 240 KRAKRSDTDS YS |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription regulator that may repress the maturation program during early embryogenesis. {ECO:0000269|PubMed:21330492}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00413 | DAP | Transfer from AT3G58630 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009400082.1 | 1e-172 | PREDICTED: trihelix transcription factor ASIL2-like | ||||
Swissprot | Q9LJG8 | 6e-39 | ASIL2_ARATH; Trihelix transcription factor ASIL2 | ||||
TrEMBL | M0SWZ5 | 0.0 | M0SWZ5_MUSAM; Uncharacterized protein | ||||
STRING | GSMUA_Achr5P09160_001 | 0.0 | (Musa acuminata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2065 | 32 | 79 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G58630.1 | 2e-40 | sequence-specific DNA binding transcription factors |