PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSMUA_Achr5P09110_001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
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Family | MYB_related | ||||||||
Protein Properties | Length: 128aa MW: 14587.8 Da PI: 8.4572 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 35.2 | 2.8e-11 | 31 | 75 | 3 | 45 |
SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwq 45 +WT+e + + da +++ ++ +W+++ar + g+t +++k ++ GSMUA_Achr5P09110_001 31 SWTEEQNKMFEDALAKYDKDtpdRWNKVARAVR-GKTVEEVKRHYE 75 7********************************.**********96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 8.9E-5 | 26 | 76 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51293 | 11.578 | 27 | 82 | IPR017884 | SANT domain |
SMART | SM00717 | 2.3E-9 | 28 | 80 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 6.58E-14 | 30 | 86 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.54E-8 | 31 | 78 | No hit | No description |
Pfam | PF00249 | 2.1E-8 | 31 | 75 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 128 aa Download sequence Send to blast |
MLEFGSMKKI PCVEVRGKGG KLYGKEEVSS SWTEEQNKMF EDALAKYDKD TPDRWNKVAR 60 AVRGKTVEEV KRHYELLVED IGRIENGHMP YGKYLSTSRR GTLIALPTVH CSSPYIFSSS 120 LLCLELNL |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2cjj_A | 1e-24 | 32 | 97 | 11 | 76 | RADIALIS |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_018681790.1 | 7e-71 | PREDICTED: protein RADIALIS-like 4 | ||||
Swissprot | F4JVB8 | 4e-27 | RADL1_ARATH; Protein RADIALIS-like 1 | ||||
TrEMBL | M0SWZ0 | 2e-90 | M0SWZ0_MUSAM; Uncharacterized protein | ||||
STRING | GSMUA_Achr5P09110_001 | 3e-91 | (Musa acuminata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP270 | 38 | 230 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G39250.1 | 2e-29 | RAD-like 1 |
Publications ? help Back to Top | |||
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