PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr5P08580_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family WRKY
Protein Properties Length: 306aa    MW: 33799 Da    PI: 6.9465
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr5P08580_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY64.22.2e-20131193259
                            --SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSS..TTEEEEEEES--SS- CS
                   WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaed..pkvveitYegeHnhe 59 
                            dDg++WrKYGqK+++++++prsYYrC ++   gCp++k v++++ d  p  +++ Y+ +H+++
  GSMUA_Achr5P08580_001 131 DDGHSWRKYGQKDINSAKYPRSYYRCIHRkeqGCPATKTVQQEDGDayPPQFIVAYSMQHTCR 193
                            8**************************998889**********9984456899*******996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.805.3E-23116193IPR003657WRKY domain
SuperFamilySSF1182905.1E-20123193IPR003657WRKY domain
SMARTSM007742.6E-29130194IPR003657WRKY domain
PROSITE profilePS5081117.408131190IPR003657WRKY domain
PfamPF031062.0E-23131193IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 306 aa     Download sequence    Send to blast
MATNSCTSWM LAYKETIALS LLGRQACSPG MGRHAELDSN SEHCDNRLAI DKINQAHELA  60
RQLRAVLLSS SLPAGSSAEL AREILDKLMK CSASALSRLQ SCCCRTCHGV GQRSREKTHN  120
TWCTVTSVPY DDGHSWRKYG QKDINSAKYP RSYYRCIHRK EQGCPATKTV QQEDGDAYPP  180
QFIVAYSMQH TCRSMGASIA FAMESAPKEE ASFEGSRSSR HLLPPPPSTA TAANQSQTSS  240
PSSVGDRDDT TRLSISELSW QEIMNTSPPA DTWSMDSNWE TVMGCFDVGV LCDQVLFLDP  300
LLVRPF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6ir8_A3e-15131193969OsWRKY45
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009400161.10.0PREDICTED: probable WRKY transcription factor 70
TrEMBLM0SWT70.0M0SWT7_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr5P08580_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP32583079
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G11070.25e-20WRKY family protein