PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSMUA_Achr5P07840_001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
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Family | HSF | ||||||||
Protein Properties | Length: 260aa MW: 29904.4 Da PI: 7.1509 | ||||||||
Description | HSF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HSF_DNA-bind | 116.4 | 1.7e-36 | 25 | 117 | 2 | 103 |
HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXX CS HSF_DNA-bind 2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkg 89 Fl+k+y+i++d+++++++sw e++++fvv+ + efa+++Lp+yFkh+nf+SFvRQLn+YgF+k+ ++ weF+++ F+kg GSMUA_Achr5P07840_001 25 FLTKTYQIVDDPDTDHIVSWGEDETTFVVWRPPEFARDLLPNYFKHNNFSSFVRQLNTYGFRKIAADR---------WEFANEFFRKG 103 9****************************************************************999.........*********** PP XXXXXXXXXXXXXX CS HSF_DNA-bind 90 kkellekikrkkse 103 k+ll++i+r+k + GSMUA_Achr5P07840_001 104 GKHLLSEIHRRKAS 117 ***********986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.10 | 3.7E-38 | 16 | 108 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
SMART | SM00415 | 1.7E-57 | 21 | 114 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
SuperFamily | SSF46785 | 2.01E-34 | 22 | 114 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
PRINTS | PR00056 | 7.0E-20 | 25 | 48 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
Pfam | PF00447 | 6.4E-32 | 25 | 114 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 7.0E-20 | 63 | 75 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PROSITE pattern | PS00434 | 0 | 64 | 88 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 7.0E-20 | 76 | 88 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0042802 | Molecular Function | identical protein binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 260 aa Download sequence Send to blast |
MAFLVERCGE MAASMVSHRP VPAPFLTKTY QIVDDPDTDH IVSWGEDETT FVVWRPPEFA 60 RDLLPNYFKH NNFSSFVRQL NTYGFRKIAA DRWEFANEFF RKGGKHLLSE IHRRKASQAS 120 QSYNHLQHQL LNHSPPPHHL PDEASSWIEP PPTAAGGDAD FLSALSQDNQ RLRRRNSLLL 180 SELTHMKKLY NDIMHFLQNH VASVSTDQSC ADPRGHRLVM DSQSGSQWHR DEGSIKLFGV 240 PLHDNKKRVH LETESETSEK |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2ldu_A | 3e-22 | 21 | 117 | 17 | 123 | Heat shock factor protein 1 |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator that specifically binds DNA of heat shock promoter elements (HSE). {ECO:0000269|PubMed:16202242}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009399944.2 | 0.0 | PREDICTED: heat stress transcription factor B-4b-like | ||||
Swissprot | Q7XHZ0 | 9e-96 | HFB4B_ORYSJ; Heat stress transcription factor B-4b | ||||
TrEMBL | M0SWL3 | 0.0 | M0SWL3_MUSAM; Uncharacterized protein | ||||
STRING | GSMUA_Achr5P07840_001 | 0.0 | (Musa acuminata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP121 | 37 | 394 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G46264.1 | 6e-62 | heat shock transcription factor B4 |
Publications ? help Back to Top | |||
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