PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSMUA_Achr5P07600_001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
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Family | NAC | ||||||||
Protein Properties | Length: 246aa MW: 27925.2 Da PI: 9.7037 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 179 | 1.2e-55 | 16 | 143 | 1 | 129 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgk 88 lppGfrFhP dee++++yL +k+ ++ +++ ++i evd++++ePwdLp+k+k +ek++yfF++rd+ky+tg r+nrat+sgyWkatgk GSMUA_Achr5P07600_001 16 LPPGFRFHPMDEEIITHYLSRKIINHGFTA-RAIGEVDLNRCEPWDLPSKAKMGEKDMYFFCQRDRKYPTGMRTNRATESGYWKATGK 102 79*************************999.89***************99999*********************************** PP NAM 89 dkevlskkgelvglkktLvfykgrapkgektdWvmheyrle 129 dke+++ kg lvg+kktLvfykgrapkg+kt+Wvmhe+rle GSMUA_Achr5P07600_001 103 DKEIYRGKGVLVGMKKTLVFYKGRAPKGQKTNWVMHEFRLE 143 **************************************985 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 4.32E-63 | 13 | 167 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 58.216 | 16 | 167 | IPR003441 | NAC domain |
Pfam | PF02365 | 2.5E-28 | 17 | 142 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005737 | Cellular Component | cytoplasm | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 246 aa Download sequence Send to blast |
MADVPVLDKG DDCMDLPPGF RFHPMDEEII THYLSRKIIN HGFTARAIGE VDLNRCEPWD 60 LPSKAKMGEK DMYFFCQRDR KYPTGMRTNR ATESGYWKAT GKDKEIYRGK GVLVGMKKTL 120 VFYKGRAPKG QKTNWVMHEF RLEGKYSLPN LPKSAKDEWV VCRVFHKSIG PKKSPPPGTE 180 RINSYADDLL DSGTLPPLMD PPHMEYTMGP DDLKSTSSQP GFIRSTPSAK RLLLAPGFRE 240 SRLLAP |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3swm_A | 2e-52 | 14 | 173 | 18 | 174 | NAC domain-containing protein 19 |
3swm_B | 2e-52 | 14 | 173 | 18 | 174 | NAC domain-containing protein 19 |
3swm_C | 2e-52 | 14 | 173 | 18 | 174 | NAC domain-containing protein 19 |
3swm_D | 2e-52 | 14 | 173 | 18 | 174 | NAC domain-containing protein 19 |
3swp_A | 2e-52 | 14 | 173 | 18 | 174 | NAC domain-containing protein 19 |
3swp_B | 2e-52 | 14 | 173 | 18 | 174 | NAC domain-containing protein 19 |
3swp_C | 2e-52 | 14 | 173 | 18 | 174 | NAC domain-containing protein 19 |
3swp_D | 2e-52 | 14 | 173 | 18 | 174 | NAC domain-containing protein 19 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Binds to the promoter regions of genes involved in chlorophyll catabolic processes, such as NYC1, SGR1, SGR2 and PAO. {ECO:0000269|PubMed:27021284}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00518 | DAP | Transfer from AT5G18270 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009399923.1 | 1e-158 | PREDICTED: NAC domain-containing protein 79-like | ||||
Swissprot | Q9FK44 | 1e-103 | NAC87_ARATH; NAC domain-containing protein 87 | ||||
TrEMBL | M0SWI9 | 0.0 | M0SWI9_MUSAM; Uncharacterized protein | ||||
STRING | GSMUA_Achr5P07600_001 | 0.0 | (Musa acuminata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1862 | 38 | 104 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G18270.2 | 1e-104 | Arabidopsis NAC domain containing protein 87 |
Publications ? help Back to Top | |||
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