PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr5P07600_001
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family NAC
Protein Properties Length: 246aa    MW: 27925.2 Da    PI: 9.7037
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr5P07600_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM1791.2e-55161431129
                    NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgk 88 
                            lppGfrFhP dee++++yL +k+ ++ +++ ++i evd++++ePwdLp+k+k +ek++yfF++rd+ky+tg r+nrat+sgyWkatgk
  GSMUA_Achr5P07600_001  16 LPPGFRFHPMDEEIITHYLSRKIINHGFTA-RAIGEVDLNRCEPWDLPSKAKMGEKDMYFFCQRDRKYPTGMRTNRATESGYWKATGK 102
                            79*************************999.89***************99999*********************************** PP

                    NAM  89 dkevlskkgelvglkktLvfykgrapkgektdWvmheyrle 129
                            dke+++ kg lvg+kktLvfykgrapkg+kt+Wvmhe+rle
  GSMUA_Achr5P07600_001 103 DKEIYRGKGVLVGMKKTLVFYKGRAPKGQKTNWVMHEFRLE 143
                            **************************************985 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019414.32E-6313167IPR003441NAC domain
PROSITE profilePS5100558.21616167IPR003441NAC domain
PfamPF023652.5E-2817142IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005737Cellular Componentcytoplasm
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 246 aa     Download sequence    Send to blast
MADVPVLDKG DDCMDLPPGF RFHPMDEEII THYLSRKIIN HGFTARAIGE VDLNRCEPWD  60
LPSKAKMGEK DMYFFCQRDR KYPTGMRTNR ATESGYWKAT GKDKEIYRGK GVLVGMKKTL  120
VFYKGRAPKG QKTNWVMHEF RLEGKYSLPN LPKSAKDEWV VCRVFHKSIG PKKSPPPGTE  180
RINSYADDLL DSGTLPPLMD PPHMEYTMGP DDLKSTSSQP GFIRSTPSAK RLLLAPGFRE  240
SRLLAP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3swm_A2e-521417318174NAC domain-containing protein 19
3swm_B2e-521417318174NAC domain-containing protein 19
3swm_C2e-521417318174NAC domain-containing protein 19
3swm_D2e-521417318174NAC domain-containing protein 19
3swp_A2e-521417318174NAC domain-containing protein 19
3swp_B2e-521417318174NAC domain-containing protein 19
3swp_C2e-521417318174NAC domain-containing protein 19
3swp_D2e-521417318174NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtBinds to the promoter regions of genes involved in chlorophyll catabolic processes, such as NYC1, SGR1, SGR2 and PAO. {ECO:0000269|PubMed:27021284}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00518DAPTransfer from AT5G18270Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009399923.11e-158PREDICTED: NAC domain-containing protein 79-like
SwissprotQ9FK441e-103NAC87_ARATH; NAC domain-containing protein 87
TrEMBLM0SWI90.0M0SWI9_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr5P07600_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP186238104
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G18270.21e-104Arabidopsis NAC domain containing protein 87
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]