PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSMUA_Achr5P07490_001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
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Family | WRKY | ||||||||
Protein Properties | Length: 335aa MW: 36302.6 Da PI: 5.4346 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 74.1 | 1.8e-23 | 161 | 222 | 1 | 59 |
---SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnhe 59 ldDg +WrKYGqKe++++++prsY+rCt++ gC+++++ + s++dp+ ++itY geH+++ GSMUA_Achr5P07490_001 161 LDDGQTWRKYGQKEIQSAKHPRSYFRCTHKydqGCMAHRQAQLSEDDPTDFVITYIGEHTCR 222 58***************************99999*************************996 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 3.9E-24 | 154 | 224 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 21.482 | 156 | 224 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 9.55E-24 | 156 | 224 | IPR003657 | WRKY domain |
SMART | SM00774 | 3.5E-32 | 161 | 223 | IPR003657 | WRKY domain |
Pfam | PF03106 | 7.3E-22 | 162 | 222 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 335 aa Download sequence Send to blast |
MTTRPLLLHD VALLSLKLPL PIMLSLGKAG AFGGGRGEGE MEQTPAVACG EAEESLVGGT 60 VVREMAKIRA STSRLGVLLR EALEGNSTVG AVFEELEGSI SRAFSLLDRK QQGGDAPPSS 120 GHQSSEIPTK KRKVNPAGDR RGGCRRRIQS SSLRIVKSKT LDDGQTWRKY GQKEIQSAKH 180 PRSYFRCTHK YDQGCMAHRQ AQLSEDDPTD FVITYIGEHT CRDPTVVPPQ MVSASIFQDT 240 CLISFGAGGH GVRQEASVPA SFASQKQESD EDAASNLTTA SSSSGYFLLP ATENPVVTTP 300 DVTSGFHTAT DLDMDFMADT YLEDVFGFDD DEFFR |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6ir8_A | 4e-31 | 159 | 222 | 6 | 69 | OsWRKY45 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009399911.1 | 0.0 | PREDICTED: probable WRKY transcription factor 38 | ||||
TrEMBL | M0SWH8 | 0.0 | M0SWH8_MUSAM; Uncharacterized protein | ||||
STRING | GSMUA_Achr5P07490_001 | 0.0 | (Musa acuminata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP7656 | 35 | 49 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G56400.1 | 1e-27 | WRKY DNA-binding protein 70 |