PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr5P07490_001
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family WRKY
Protein Properties Length: 335aa    MW: 36302.6 Da    PI: 5.4346
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr5P07490_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY74.11.8e-23161222159
                            ---SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS- CS
                   WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnhe 59 
                            ldDg +WrKYGqKe++++++prsY+rCt++   gC+++++ + s++dp+ ++itY geH+++
  GSMUA_Achr5P07490_001 161 LDDGQTWRKYGQKEIQSAKHPRSYFRCTHKydqGCMAHRQAQLSEDDPTDFVITYIGEHTCR 222
                            58***************************99999*************************996 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.803.9E-24154224IPR003657WRKY domain
PROSITE profilePS5081121.482156224IPR003657WRKY domain
SuperFamilySSF1182909.55E-24156224IPR003657WRKY domain
SMARTSM007743.5E-32161223IPR003657WRKY domain
PfamPF031067.3E-22162222IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 335 aa     Download sequence    Send to blast
MTTRPLLLHD VALLSLKLPL PIMLSLGKAG AFGGGRGEGE MEQTPAVACG EAEESLVGGT  60
VVREMAKIRA STSRLGVLLR EALEGNSTVG AVFEELEGSI SRAFSLLDRK QQGGDAPPSS  120
GHQSSEIPTK KRKVNPAGDR RGGCRRRIQS SSLRIVKSKT LDDGQTWRKY GQKEIQSAKH  180
PRSYFRCTHK YDQGCMAHRQ AQLSEDDPTD FVITYIGEHT CRDPTVVPPQ MVSASIFQDT  240
CLISFGAGGH GVRQEASVPA SFASQKQESD EDAASNLTTA SSSSGYFLLP ATENPVVTTP  300
DVTSGFHTAT DLDMDFMADT YLEDVFGFDD DEFFR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6ir8_A4e-31159222669OsWRKY45
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009399911.10.0PREDICTED: probable WRKY transcription factor 38
TrEMBLM0SWH80.0M0SWH8_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr5P07490_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP76563549
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G56400.11e-27WRKY DNA-binding protein 70