PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSMUA_Achr5P07380_001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
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Family | MYB | ||||||||
Protein Properties | Length: 232aa MW: 23925.5 Da PI: 4.3549 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 26.2 | 1.8e-08 | 25 | 51 | 1 | 27 |
TSSS-HHHHHHHHHHHHHTTTT-HHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktI 27 +g+W +eEd l ++v+q+G+++W++I GSMUA_Achr5P07380_001 25 KGSWNPEEDAVLMRLVEQHGPRNWTAI 51 799**********************99 PP | |||||||
2 | Myb_DNA-binding | 42.8 | 1.2e-13 | 51 | 84 | 12 | 47 |
HHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 12 lvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +v a++++G++ W+tIar ++ gRt++ +k++w++ GSMUA_Achr5P07380_001 51 IVAAHALYGNK-WATIARLLP-GRTDNAVKNHWNST 84 799********.*********.***********986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 18.845 | 20 | 89 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 3.2E-15 | 24 | 81 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 3.5E-13 | 24 | 87 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 8.2E-7 | 25 | 51 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.0E-8 | 25 | 51 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.65E-12 | 27 | 85 | No hit | No description |
Pfam | PF00249 | 4.2E-10 | 52 | 84 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 2.0E-14 | 52 | 86 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 232 aa Download sequence Send to blast |
MVIYVVGEEE MAVVKGGDVG EQPVKGSWNP EEDAVLMRLV EQHGPRNWTA IVAAHALYGN 60 KWATIARLLP GRTDNAVKNH WNSTLRRRLQ AAADAVDASA SERPVPSSPM QLDAAATAPV 120 AADSDEPGES DSGSLSGKRP CLRDDDATDG SAGGSGPVTS LTLGRLGEGG GTDGGGGRLW 180 EEPTAGMCLL AIIREMIVEE VTSYMNRLPS GGGSGGGSSI IIGTDSASNG QD |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gv2_A | 5e-17 | 24 | 89 | 3 | 105 | MYB PROTO-ONCOGENE PROTEIN |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009400144.1 | 1e-121 | PREDICTED: transcription factor MYB44-like | ||||
TrEMBL | M0SWG7 | 1e-164 | M0SWG7_MUSAM; Uncharacterized protein | ||||
STRING | GSMUA_Achr5P07380_001 | 1e-165 | (Musa acuminata) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G37260.1 | 7e-24 | myb domain protein 73 |