PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | GSMUA_Achr5P07150_001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
|
||||||||
Family | Dof | ||||||||
Protein Properties | Length: 330aa MW: 35214.7 Da PI: 9.2983 | ||||||||
Description | Dof family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-Dof | 123 | 9.9e-39 | 71 | 131 | 2 | 62 |
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 +e+alkcprCdstntkfCy+nnyslsqPr+fCk+CrryWt+GGalrnvPvGgg+r++k+++ GSMUA_Achr5P07150_001 71 PEQALKCPRCDSTNTKFCYFNNYSLSQPRHFCKTCRRYWTRGGALRNVPVGGGCRRKKRTK 131 7899*****************************************************9875 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
ProDom | PD007478 | 5.0E-34 | 55 | 129 | IPR003851 | Zinc finger, Dof-type |
Pfam | PF02701 | 8.1E-33 | 73 | 129 | IPR003851 | Zinc finger, Dof-type |
PROSITE profile | PS50884 | 29.553 | 75 | 129 | IPR003851 | Zinc finger, Dof-type |
PROSITE pattern | PS01361 | 0 | 77 | 113 | IPR003851 | Zinc finger, Dof-type |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 330 aa Download sequence Send to blast |
MVFPSFPVYL DPPYWNQQQA HQLGGGYGGG GSELPQLAPP PGLVGAPRGT VSSIRPGSMA 60 ARARLAKMAQ PEQALKCPRC DSTNTKFCYF NNYSLSQPRH FCKTCRRYWT RGGALRNVPV 120 GGGCRRKKRT KCGDSSSSSK SSVTSAGRQS GATTSSTTLQ PQPLPTTSLH PLPDCRAPNV 180 GSSFAGIQSS DAVDYQMSGN GSVGLENSRL HNQIQQFPPF MGGMEPPPPR PPPPPSVPSL 240 APVPSLYPSF IQEDSELDGR SFASPLQSKV LGSGLLMQLA SVKMDDNAQE LTLPRPLSGG 300 FRDELIWGGS SGGWATCFSS FNSPSNDNFM |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_009400141.1 | 0.0 | PREDICTED: dof zinc finger protein DOF5.1-like isoform X1 | ||||
TrEMBL | M0SWE4 | 0.0 | M0SWE4_MUSAM; Uncharacterized protein | ||||
STRING | GSMUA_Achr5P07150_001 | 0.0 | (Musa acuminata) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP4893 | 29 | 61 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT3G55370.1 | 5e-45 | OBF-binding protein 3 |