PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSMUA_Achr5P06660_001

Organism

Musa acuminata

Taxonomic ID

4641

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa

Family

TCP

Protein Properties

Length: 471aa MW: 50709.8 Da PI: 9.7941

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSMUA_Achr5P06660_001	genome	CIRAD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	114.2	1.7e-35	164	238	2	74
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec..e 74 +g+kdrhsk++T++g+RdRRvRlsa++a++f+d+qd+LG+d++sk+++WL+++ak+ai+el++++ s+s++ GSMUA_Achr5P06660_001 164 TGRKDRHSKVCTAKGPRDRRVRLSAHTAIQFYDVQDRLGYDRPSKAVDWLMKNAKAAIDELAELPPWSPSATtiG 238 79**************************************************************44444333221 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03634	1.3E-31	164	229	IPR005333	Transcription factor, TCP
PROSITE profile	PS51369	34.039	166	224	IPR017887	Transcription factor TCP subgroup

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009793	Biological Process	embryo development ending in seed dormancy
GO:0009965	Biological Process	leaf morphogenesis
GO:0030154	Biological Process	cell differentiation
GO:0045962	Biological Process	positive regulation of development, heterochronic
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 471 aa Download sequence Send to blast
MAKASSRRPN ISSATRKCYQ FSSRRGRRKL RETRSSSRRQ LVRSKAGTGA QEEGAGSGSA 60 EESREEQSLR GFQLHQIHHN RSSYFSSSSS SAATASSSEY ACLPERIGEG HSHNSAGYDQ 120 LALLHHHHQQ QLQRPQPRSR HGGARGGAVG EIVEVQGGHI VRSTGRKDRH SKVCTAKGPR 180 DRRVRLSAHT AIQFYDVQDR LGYDRPSKAV DWLMKNAKAA IDELAELPPW SPSATTIGES 240 SSKPVAVADP ALSTAFSFGV GGGDGGNEGN TFLPPSLDTD SIADTIKSFF PMAAAATPPS 300 SSPSIGFLSY SPELPSRTSG QAQDLRLSLQ SFQDPIFHDP ESGHHHHHHH SHHRIAPWNM 360 VDSSGGGGGY VFSFPPPQAA PLHSLLGQSL FFSQRGPLQS SNSPAVRAWA DPVDAAADHR 420 MQPALYSSMP SIGFASGASF PGFRIPARIQ GEEEHDGHND KPPSAASASR H

Sequence ? help Back to Top

Protein Sequence Length: 471 aa Download sequence Send to blast

MAKASSRRPN ISSATRKCYQ FSSRRGRRKL RETRSSSRRQ LVRSKAGTGA QEEGAGSGSA  60
EESREEQSLR GFQLHQIHHN RSSYFSSSSS SAATASSSEY ACLPERIGEG HSHNSAGYDQ  120
LALLHHHHQQ QLQRPQPRSR HGGARGGAVG EIVEVQGGHI VRSTGRKDRH SKVCTAKGPR  180
DRRVRLSAHT AIQFYDVQDR LGYDRPSKAV DWLMKNAKAA IDELAELPPW SPSATTIGES  240
SSKPVAVADP ALSTAFSFGV GGGDGGNEGN TFLPPSLDTD SIADTIKSFF PMAAAATPPS  300
SSPSIGFLSY SPELPSRTSG QAQDLRLSLQ SFQDPIFHDP ESGHHHHHHH SHHRIAPWNM  360
VDSSGGGGGY VFSFPPPQAA PLHSLLGQSL FFSQRGPLQS SNSPAVRAWA DPVDAAADHR  420
MQPALYSSMP SIGFASGASF PGFRIPARIQ GEEEHDGHND KPPSAASASR H

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5zkt_A	1e-19	171	224	1	54	Putative transcription factor PCF6
5zkt_B	1e-19	171	224	1	54	Putative transcription factor PCF6
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Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	24	30	RGRRKLR

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor playing a pivotal role in the control of morphogenesis of shoot organs by negatively regulating the expression of boundary-specific genes such as CUC genes, probably through the induction of miRNA (e.g. miR164) (PubMed:12931144, PubMed:17307931). Required during early steps of embryogenesis (PubMed:15634699). Participates in ovule develpment (PubMed:25378179). Activates LOX2 expression by binding to the 5'-GGACCA-3' motif found in its promoter (PubMed:18816164). {ECO:0000269\|PubMed:12931144, ECO:0000269\|PubMed:15634699, ECO:0000269\|PubMed:17307931, ECO:0000269\|PubMed:18816164, ECO:0000269\|PubMed:25378179}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00009	PBM	Transfer from 929286	Download

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Repressed by the miRNA miR-JAW/miR319 (PubMed:12931144, PubMed:18816164). {ECO:0000269\|PubMed:12931144, ECO:0000269\|PubMed:18816164}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KM662611	1e-71	KM662611.1 Ananas bracteatus clone 46469a microsatellite sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018681614.1	0.0	PREDICTED: transcription factor TCP4-like, partial
Swissprot	Q8LPR5	1e-92	TCP4_ARATH; Transcription factor TCP4
TrEMBL	M0SW95	0.0	M0SW95_MUSAM; Uncharacterized protein
STRING	GSMUA_Achr5P06660_001	0.0	(Musa acuminata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP5839	33	55

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G15030.3	8e-86	TCP family protein

Publications ? help Back to Top
Schommer C, et al. Control of jasmonate biosynthesis and senescence by miR319 targets. PLoS Biol., 2008. 6(9): p. e230 [PMID:18816164] Ju Y, et al. Arabidopsis JINGUBANG Is a Negative Regulator of Pollen Germination That Prevents Pollination in Moist Environments. Plant Cell, 2016. 28(9): p. 2131-2146 [PMID:27468890] Challa KR,Aggarwal P,Nath U Activation of YUCCA5 by the Transcription Factor TCP4 Integrates Developmental and Environmental Signals to Promote Hypocotyl Elongation in Arabidopsis. Plant Cell, 2016. 28(9): p. 2117-2130 [PMID:27597774] Alvarez JP,Furumizu C,Efroni I,Eshed Y,Bowman JL Active suppression of a leaf meristem orchestrates determinate leaf growth. Elife, 2017. [PMID:27710768] Li J, et al. RABBIT EARS regulates the transcription of TCP4 during petal development in Arabidopsis. J. Exp. Bot., 2016. 67(22): p. 6473-6480 [PMID:27838638] Sun X, et al. Activation of secondary cell wall biosynthesis by miR319-targeted TCP4 transcription factor. Plant Biotechnol. J., 2017. 15(10): p. 1284-1294 [PMID:28233945] Kubota A, et al. TCP4-dependent induction of CONSTANS transcription requires GIGANTEA in photoperiodic flowering in Arabidopsis. PLoS Genet., 2017. 13(6): p. e1006856 [PMID:28628608] Koyama T,Sato F,Ohme-Takagi M Roles of miR319 and TCP Transcription Factors in Leaf Development. Plant Physiol., 2017. 175(2): p. 874-885 [PMID:28842549] Bresso EG,Chorostecki U,Rodriguez RE,Palatnik JF,Schommer C Spatial Control of Gene Expression by miR319-Regulated TCP Transcription Factors in Leaf Development. Plant Physiol., 2018. 176(2): p. 1694-1708 [PMID:29133375] Vadde BVL,Challa KR,Nath U The TCP4 transcription factor regulates trichome cell differentiation by directly activating GLABROUS INFLORESCENCE STEMS in Arabidopsis thaliana. Plant J., 2018. 93(2): p. 259-269 [PMID:29165850] Challa KR,Rath M,Nath U The CIN-TCP transcription factors promote commitment to differentiation in Arabidopsis leaf pavement cells via both auxin-dependent and independent pathways. PLoS Genet., 2019. 15(2): p. e1007988 [PMID:30742619]