PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | GSMUA_Achr5P06660_001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
|
||||||||
Family | TCP | ||||||||
Protein Properties | Length: 471aa MW: 50709.8 Da PI: 9.7941 | ||||||||
Description | TCP family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCP | 114.2 | 1.7e-35 | 164 | 238 | 2 | 74 |
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec..e 74 +g+kdrhsk++T++g+RdRRvRlsa++a++f+d+qd+LG+d++sk+++WL+++ak+ai+el++++ s+s++ GSMUA_Achr5P06660_001 164 TGRKDRHSKVCTAKGPRDRRVRLSAHTAIQFYDVQDRLGYDRPSKAVDWLMKNAKAAIDELAELPPWSPSATtiG 238 79**************************************************************44444333221 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03634 | 1.3E-31 | 164 | 229 | IPR005333 | Transcription factor, TCP |
PROSITE profile | PS51369 | 34.039 | 166 | 224 | IPR017887 | Transcription factor TCP subgroup |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0009793 | Biological Process | embryo development ending in seed dormancy | ||||
GO:0009965 | Biological Process | leaf morphogenesis | ||||
GO:0030154 | Biological Process | cell differentiation | ||||
GO:0045962 | Biological Process | positive regulation of development, heterochronic | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 471 aa Download sequence Send to blast |
MAKASSRRPN ISSATRKCYQ FSSRRGRRKL RETRSSSRRQ LVRSKAGTGA QEEGAGSGSA 60 EESREEQSLR GFQLHQIHHN RSSYFSSSSS SAATASSSEY ACLPERIGEG HSHNSAGYDQ 120 LALLHHHHQQ QLQRPQPRSR HGGARGGAVG EIVEVQGGHI VRSTGRKDRH SKVCTAKGPR 180 DRRVRLSAHT AIQFYDVQDR LGYDRPSKAV DWLMKNAKAA IDELAELPPW SPSATTIGES 240 SSKPVAVADP ALSTAFSFGV GGGDGGNEGN TFLPPSLDTD SIADTIKSFF PMAAAATPPS 300 SSPSIGFLSY SPELPSRTSG QAQDLRLSLQ SFQDPIFHDP ESGHHHHHHH SHHRIAPWNM 360 VDSSGGGGGY VFSFPPPQAA PLHSLLGQSL FFSQRGPLQS SNSPAVRAWA DPVDAAADHR 420 MQPALYSSMP SIGFASGASF PGFRIPARIQ GEEEHDGHND KPPSAASASR H |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5zkt_A | 1e-19 | 171 | 224 | 1 | 54 | Putative transcription factor PCF6 |
5zkt_B | 1e-19 | 171 | 224 | 1 | 54 | Putative transcription factor PCF6 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
---|---|---|---|
No. | Start | End | Sequence |
1 | 24 | 30 | RGRRKLR |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Transcription factor playing a pivotal role in the control of morphogenesis of shoot organs by negatively regulating the expression of boundary-specific genes such as CUC genes, probably through the induction of miRNA (e.g. miR164) (PubMed:12931144, PubMed:17307931). Required during early steps of embryogenesis (PubMed:15634699). Participates in ovule develpment (PubMed:25378179). Activates LOX2 expression by binding to the 5'-GGACCA-3' motif found in its promoter (PubMed:18816164). {ECO:0000269|PubMed:12931144, ECO:0000269|PubMed:15634699, ECO:0000269|PubMed:17307931, ECO:0000269|PubMed:18816164, ECO:0000269|PubMed:25378179}. |
Binding Motif ? help Back to Top | |||
---|---|---|---|
Motif ID | Method | Source | Motif file |
MP00009 | PBM | Transfer from 929286 | Download |
Regulation -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | INDUCTION: Repressed by the miRNA miR-JAW/miR319 (PubMed:12931144, PubMed:18816164). {ECO:0000269|PubMed:12931144, ECO:0000269|PubMed:18816164}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | KM662611 | 1e-71 | KM662611.1 Ananas bracteatus clone 46469a microsatellite sequence. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_018681614.1 | 0.0 | PREDICTED: transcription factor TCP4-like, partial | ||||
Swissprot | Q8LPR5 | 1e-92 | TCP4_ARATH; Transcription factor TCP4 | ||||
TrEMBL | M0SW95 | 0.0 | M0SW95_MUSAM; Uncharacterized protein | ||||
STRING | GSMUA_Achr5P06660_001 | 0.0 | (Musa acuminata) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP5839 | 33 | 55 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT3G15030.3 | 8e-86 | TCP family protein |