PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSMUA_Achr5P06260_001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
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Family | WRKY | ||||||||
Protein Properties | Length: 103aa MW: 12351.2 Da PI: 10.5017 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 104.4 | 6.3e-33 | 26 | 84 | 1 | 59 |
---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 ldDgy+WrKYGqK+vk++++prsYYrCt+++C+vkk++er edp++v++tYeg+H h+ GSMUA_Achr5P06260_001 26 LDDGYKWRKYGQKVVKNTQHPRSYYRCTQENCRVKKRIERLPEDPRMVITTYEGRHVHS 84 59********************************************************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 2.6E-34 | 11 | 84 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 3.79E-29 | 18 | 85 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 29.126 | 21 | 86 | IPR003657 | WRKY domain |
SMART | SM00774 | 3.8E-36 | 26 | 85 | IPR003657 | WRKY domain |
Pfam | PF03106 | 1.2E-25 | 27 | 83 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 103 aa Download sequence Send to blast |
MKKVKAKRKV REPRFCFKTM SEVDVLDDGY KWRKYGQKVV KNTQHPRSYY RCTQENCRVK 60 KRIERLPEDP RMVITTYEGR HVHSPSHDES SSSQVSSKVT VFW |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wj2_A | 7e-28 | 17 | 83 | 8 | 74 | Probable WRKY transcription factor 4 |
2lex_A | 7e-28 | 17 | 83 | 8 | 74 | Probable WRKY transcription factor 4 |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009399778.1 | 1e-71 | PREDICTED: probable WRKY transcription factor 13 | ||||
Swissprot | Q9SVB7 | 2e-53 | WRK13_ARATH; Probable WRKY transcription factor 13 | ||||
TrEMBL | M0SW55 | 2e-70 | M0SW55_MUSAM; Uncharacterized protein | ||||
STRING | GSMUA_Achr5P06260_001 | 4e-71 | (Musa acuminata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1138 | 38 | 130 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G39410.1 | 7e-50 | WRKY DNA-binding protein 13 |