PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr5P05910_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family MYB
Protein Properties Length: 246aa    MW: 28248.2 Da    PI: 7.3538
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr5P05910_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding47.54e-151461148
                           TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
        Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                           +g+WT+eEd++l+d +   G  +W+++++  g+ R++k+c++rw +yl
  GSMUA_Achr5P05910_001 14 KGPWTAEEDKKLIDFILTQGLCCWRAVPKLAGLLRCGKSCRLRWTNYL 61
                           79******************************99************97 PP
2Myb_DNA-binding44.24.5e-1470109445
                            S-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
        Myb_DNA-binding   4 WTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 
                             +++E++l ++++ qlG++ W++Ia+ ++ gRt++++k+ w+
  GSMUA_Achr5P05910_001  70 LSEDEEKLVIELHSQLGNR-WSKIASQLP-GRTDNEIKNIWN 109
                            589****************.*********.*********997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.602.6E-19563IPR009057Homeodomain-like
PROSITE profilePS5129411.987961IPR017930Myb domain
SuperFamilySSF466897.86E-2711108IPR009057Homeodomain-like
SMARTSM007171.1E-111363IPR001005SANT/Myb domain
PfamPF002491.0E-131461IPR001005SANT/Myb domain
CDDcd001673.50E-81661No hitNo description
PROSITE profilePS5129423.08862116IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.8E-2264116IPR009057Homeodomain-like
SMARTSM007173.6E-1166114IPR001005SANT/Myb domain
PfamPF002491.3E-1270109IPR001005SANT/Myb domain
CDDcd001671.15E-871109No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 246 aa     Download sequence    Send to blast
MGRKPCCEKV GLKKGPWTAE EDKKLIDFIL TQGLCCWRAV PKLAGLLRCG KSCRLRWTNY  60
LRPDLRRGLL SEDEEKLVIE LHSQLGNRWS KIASQLPGRT DNEIKNIWNS RIKKELRKMG  120
IDPLTHKPIS PSTEELHRHQ HHQQKEQQRR CMDSTASPRD PAADESLGNC PEFCTDEVPM  180
LQPHEILIPC DSSACSSSCS SASSSSSSFP RMELPESMHL WGSIDQELTW KSYQEDWKYD  240
VFCFDC
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A2e-28121165108B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that acts as positive regulator of abscisic acid (ABA) signaling in response to salt stress. Acts as negative regulator ABI1, ABI2 and PP2CA, which are protein phosphatases 2C acting as negative regulator of ABA signaling. Binds to the DNA specific sequence and core element 5'-ACGT-3' found in the promoters of ABI1 and PP2CA to negatively regulate their expression during ABA-dependent salt stress response. {ECO:0000269|PubMed:23660402}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by salt stress, drought stress and abscisic acid (ABA). Down-regulated by salicylic acid (SA) methyl jasmonate (JA). {ECO:0000269|PubMed:23660402}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009400120.11e-151PREDICTED: protein ODORANT1-like
SwissprotQ9C7U71e-79MYB20_ARATH; Transcription factor MYB20
TrEMBLM0SW200.0M0SW20_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr5P05910_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP7938563
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G16600.11e-81myb domain protein 43
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]