PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr5P04270_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family CO-like
Protein Properties Length: 422aa    MW: 46198.3 Da    PI: 5.617
Description CO-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr5P04270_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box20.11.3e-06335436
               zf-B_box  4 rkCpeHeekelqlfCedCqqllCedClleeHkg 36
                           + C+ ++e++ +++C+++   lC +C  + H+ 
  GSMUA_Achr5P04270_001  3 HLCDFCGEQRSIIYCRSDAASLCLSCDRNVHSA 35
                           78***************************9954 PP
2zf-B_box21.54.7e-074789541
               zf-B_box  5 kCpeHeekelqlfCedCqqllCedClleeHkg......Htvvp 41
                            C++++ +++ + C + ++ lC++C  ++H g      H++++
  GSMUA_Achr5P04270_001 47 LCDRCSAQPAVIRCIEESVSLCKNCDWNSHDGsgvasgHKRQT 89
                           7*****************************7788999999876 PP
3CCT65.12e-22365408144
                    CCT   1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 
                            R+ a++RYkeK+k RkFeKkirY+sRKa+A+ R RvKGrFvk+ 
  GSMUA_Achr5P04270_001 365 RDSAVMRYKEKKKARKFEKKIRYASRKAMADVRRRVKGRFVKAG 408
                            899**************************************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501199.613147IPR000315B-box-type zinc finger
SMARTSM003361.0E-7147IPR000315B-box-type zinc finger
CDDcd000219.58E-6435No hitNo description
PROSITE profilePS501199.0724390IPR000315B-box-type zinc finger
CDDcd000210.008174790No hitNo description
SMARTSM003360.344890IPR000315B-box-type zinc finger
PfamPF062032.7E-17365407IPR010402CCT domain
PROSITE profilePS5101715.606365407IPR010402CCT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 422 aa     Download sequence    Send to blast
MNHLCDFCGE QRSIIYCRSD AASLCLSCDR NVHSANALSR RHLRTLLCDR CSAQPAVIRC  60
IEESVSLCKN CDWNSHDGSG VASGHKRQTI NCYSGCPSAA ELSRILPFFQ EFPPVAEPDC  120
EKGLGLMTIS ENNISNCWGR PESNSTLGIS SEGKMKDPIV VDKLNPLTGS SSGPAICPLP  180
STADQTAGSV DSTIPKLDCV GTKDFEFSKD DFCEDFNVND VDMTFQSYEH LFGVSHNQIN  240
HIFDDDDGID SFFDLRETSA ANSNHQDEFF GEASSAGQPN PMLATRSNAV SADSVMSNQG  300
KNADSRLFIS ASHAHFSLSL SFSGLTGESG AGDYQDCGGS SVPFRGEPPW FPADPENSQL  360
PTASRDSAVM RYKEKKKARK FEKKIRYASR KAMADVRRRV KGRFVKAGEA YDYDPLAQTR  420
SF
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009399530.10.0PREDICTED: zinc finger protein CONSTANS-LIKE 9-like
RefseqXP_018681359.10.0PREDICTED: zinc finger protein CONSTANS-LIKE 9-like
TrEMBLM0SVK60.0M0SVK6_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr5P04270_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP20793788
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G07650.43e-97CONSTANS-like 9