PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSMUA_Achr5P03960_001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
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Family | ARF | ||||||||
Protein Properties | Length: 559aa MW: 61219.8 Da PI: 6.3451 | ||||||||
Description | ARF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 44.6 | 2.6e-14 | 121 | 179 | 40 | 99 |
E.TTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS B3 40 d.esgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 d +g +++++iyr++++r++lt+GW+ Fv++++L +gD++vF +++++ l+++++r+ GSMUA_Achr5P03960_001 121 DaNNGGGFSFRHIYRGTPRRHLLTTGWSTFVNQKKLVAGDSIVFL--RTENGDLCMGIRRA 179 44678899*************************************..45888889999986 PP | |||||||
2 | Auxin_resp | 116.5 | 2.3e-38 | 206 | 289 | 1 | 83 |
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrl.sGtvvgvsdldpvrWpnSkWrsLk 83 aa+ a+ +++FevvY+Pr+st+eF+vk+++v++a++++++ GmRfkmafetedss++++ +Gt+++v+ +dpv+WpnS+Wr+L+ GSMUA_Achr5P03960_001 206 AATLAARGQPFEVVYYPRVSTPEFCVKAASVKAAMRIQWCSGMRFKMAFETEDSSRISWfMGTISSVQIADPVQWPNSPWRLLQ 289 688999****************************************************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101936 | 1.83E-13 | 110 | 181 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 3.08E-9 | 112 | 178 | No hit | No description |
PROSITE profile | PS50863 | 9.248 | 115 | 180 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 5.2E-12 | 123 | 179 | IPR003340 | B3 DNA binding domain |
Gene3D | G3DSA:2.40.330.10 | 5.6E-16 | 129 | 181 | IPR015300 | DNA-binding pseudobarrel domain |
Pfam | PF06507 | 1.8E-33 | 206 | 289 | IPR010525 | Auxin response factor |
PROSITE profile | PS51745 | 20.608 | 473 | 553 | IPR000270 | PB1 domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009725 | Biological Process | response to hormone | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0005515 | Molecular Function | protein binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 559 aa Download sequence Send to blast |
MKQINKCLDS QLWHACAGGM VQMPAVNSKV YYFPQGHAEH AQGSVDFGTS QRIPPLILAT 60 VTAVKFLAEP ETDEVFAKIR MVPLTADELE CGQDDALGLV IDGSNTQEKL ASFAKTLTQS 120 DANNGGGFSF RHIYRGTPRR HLLTTGWSTF VNQKKLVAGD SIVFLRTENG DLCMGIRRAK 180 RGGVGGGPEI PSGWILPNGN YSVIEAATLA ARGQPFEVVY YPRVSTPEFC VKAASVKAAM 240 RIQWCSGMRF KMAFETEDSS RISWFMGTIS SVQIADPVQW PNSPWRLLQV TWDEPDFLQN 300 VKCVNPWLVE LVSNMPTIHL APFSPPKKKI CISQYPDFCL EGQPPLPMFL RDPLGHGTSP 360 LCCFPDSAPA GIQGARHAHF GVSLSDIHLN KLQLGLFHAG VHRLDQTTPP SRTTTGLIID 420 NPAILLFGKT ILTEDQISLS NSGDMVFPGA TGNSSADGNL EKTTNMSDLG LETGHCKIFM 480 ESVDVGRTLD LSMFESYEEL YTKLADMFGI GKSEIRSHMI YNDAAGAVKH TGDEPYSEFM 540 KTARRLTIST DSGSDDIGR |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4ldy_A | 2e-61 | 4 | 310 | 15 | 353 | Auxin response factor 1 |
4ldy_B | 2e-61 | 4 | 310 | 15 | 353 | Auxin response factor 1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_018682205.1 | 0.0 | PREDICTED: auxin response factor 18-like isoform X2 | ||||
Swissprot | Q653H7 | 0.0 | ARFR_ORYSJ; Auxin response factor 18 | ||||
TrEMBL | M0SVH5 | 0.0 | M0SVH5_MUSAM; Auxin response factor | ||||
STRING | GSMUA_Achr5P03960_001 | 0.0 | (Musa acuminata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP516 | 37 | 152 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G30080.1 | 0.0 | auxin response factor 16 |
Publications ? help Back to Top | |||
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