PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSMUA_Achr5P03920_001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
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Family | MYB | ||||||||
Protein Properties | Length: 240aa MW: 26932.2 Da PI: 6.3591 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 57.6 | 2.8e-18 | 14 | 61 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+eEd+ lvd+v+++G +W++ ++ g+ R++k+c++rw +yl GSMUA_Achr5P03920_001 14 KGPWTPEEDQVLVDYVHRYGHANWRALPKQAGLLRCGKSCRLRWVNYL 61 79******************************99************97 PP | |||||||
2 | Myb_DNA-binding | 45.5 | 1.8e-14 | 67 | 112 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg++T eE+e ++ ++ +lG++ W++Ia++++ gRt++++k+ w+++l GSMUA_Achr5P03920_001 67 RGNFTREEQETIIGLHGMLGNR-WSAIAAKLP-GRTDNEIKNVWHTHL 112 89********************.*********.************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 4.3E-25 | 5 | 64 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 22.645 | 9 | 65 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 2.05E-30 | 10 | 108 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.7E-13 | 13 | 63 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.5E-16 | 14 | 61 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.31E-10 | 16 | 61 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 1.1E-24 | 65 | 115 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 8.8E-12 | 66 | 114 | IPR001005 | SANT/Myb domain |
PROSITE profile | PS51294 | 17.828 | 66 | 116 | IPR017930 | Myb domain |
Pfam | PF00249 | 6.0E-13 | 67 | 112 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 3.44E-8 | 69 | 112 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009651 | Biological Process | response to salt stress | ||||
GO:0009723 | Biological Process | response to ethylene | ||||
GO:0009733 | Biological Process | response to auxin | ||||
GO:0009751 | Biological Process | response to salicylic acid | ||||
GO:0009753 | Biological Process | response to jasmonic acid | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 240 aa Download sequence Send to blast |
MVRAPCCEKM GLKKGPWTPE EDQVLVDYVH RYGHANWRAL PKQAGLLRCG KSCRLRWVNY 60 LRPDIKRGNF TREEQETIIG LHGMLGNRWS AIAAKLPGRT DNEIKNVWHT HLKKRFVGPN 120 MSSSGSSKRK TTGARLASTS PEQSYSDLYS FATDWSGASG GISNVKEEGC SSQELQEIDE 180 GFWLETLSTD EPATLTIPTT TPPPPTNDRF DLFTSSDMDD TDFWLNVFMG AGDLQELTQL |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 1e-27 | 12 | 116 | 5 | 108 | B-MYB |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator involved in cold stress response (PubMed:14675437, PubMed:20807373, PubMed:22246661). Regulates positively the expression of genes involved in reactive oxygen species (ROS) scavenging such as peroxidase and superoxide dismutase during cold stress. Transactivates a complex gene network that have major effects on stress tolerance and panicle development (PubMed:20807373). {ECO:0000269|PubMed:14675437, ECO:0000269|PubMed:20807373, ECO:0000269|PubMed:22246661}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By cold stress. {ECO:0000269|PubMed:14675437, ECO:0000269|PubMed:20807373, ECO:0000269|Ref.2}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009399470.1 | 1e-162 | PREDICTED: myb-related protein Myb4-like | ||||
Swissprot | Q7XBH4 | 1e-80 | MYB4_ORYSJ; Transcription factor MYB4 | ||||
TrEMBL | M0SVH1 | 1e-180 | M0SVH1_MUSAM; Uncharacterized protein | ||||
STRING | GSMUA_Achr5P03920_001 | 1e-180 | (Musa acuminata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP79 | 38 | 563 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G31180.1 | 2e-79 | myb domain protein 14 |
Publications ? help Back to Top | |||
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