PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSMUA_Achr5P03670_001

Organism

Musa acuminata

Taxonomic ID

4641

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa

Family

WRKY

Protein Properties

Length: 339aa MW: 36797 Da PI: 4.7676

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSMUA_Achr5P03670_001	genome	CIRAD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	96.8	1.4e-30	148	206	2	59
--SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 +D ++WrKYGqK++kgs++pr+YYrC+s+ gC+++k+ver+++dp++++itY++eHnh+ GSMUA_Achr5P03670_001 148 SDLWAWRKYGQKPIKGSPYPRGYYRCSSSkGCSARKQVERCRTDPNMLVITYTSEHNHP 206 699**********************998**************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.20.25.80	9.4E-32	140	208	IPR003657	WRKY domain
PROSITE profile	PS50811	32.73	142	208	IPR003657	WRKY domain
SuperFamily	SSF118290	1.7E-26	145	208	IPR003657	WRKY domain
SMART	SM00774	3.9E-37	147	207	IPR003657	WRKY domain
Pfam	PF03106	1.2E-25	149	206	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 339 aa Download sequence Send to blast
MESDHGDLAD IVRAGGRSGP SNTEFEPVAE WQLPSGPVFV PTRTETPTNN FGDPFLNLRD 60 PLLNQYIGAE LFEGAEAMVA PARAGEMMMM MKMSSGSIAE PVDNDGGVQI SSPRTPGIKR 120 RKSQAKKVVC IPAPAASSNR SSGEVVPSDL WAWRKYGQKP IKGSPYPRGY YRCSSSKGCS 180 ARKQVERCRT DPNMLVITYT SEHNHPWPTQ RNALAGSIRF HPSKTASRSS GGSILNSPTA 240 PKEETQEAAT MSSEADEMGK TTEQAEDTGF HQIIHPSYEP TIPEADQPDD LFAYLAELEA 300 DPLSLILSKG FMETKPEEGG GDGSMDDPSF NMFDWAGSS

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5w3x_B	2e-25	123	209	3	80	Disease resistance protein RRS1
5w3x_D	2e-25	123	209	3	80	Disease resistance protein RRS1
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Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00171	DAP	Transfer from AT1G30650	Download

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009399433.1	0.0	PREDICTED: probable WRKY transcription factor 14
Swissprot	Q9SA80	3e-76	WRK14_ARATH; Probable WRKY transcription factor 14
TrEMBL	M0SVE6	0.0	M0SVE6_MUSAM; Uncharacterized protein
STRING	GSMUA_Achr5P03670_001	0.0	(Musa acuminata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2592	38	88

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G30650.1	2e-78	WRKY DNA-binding protein 14

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]