PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr5P03520_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family MYB
Protein Properties Length: 303aa    MW: 34035.1 Da    PI: 4.5984
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr5P03520_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding57.62.8e-181663148
                           TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
        Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                           +g+WT+eEd++l+ +++++G g+W++ ++  g+ R++k+c++rw +yl
  GSMUA_Achr5P03520_001 16 KGSWTQEEDLRLIAYIQKHGHGNWRALPKLAGLLRCGKSCRLRWINYL 63
                           799*****************************99************97 PP
2Myb_DNA-binding54.82.1e-1769114148
                            TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
        Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                            rg++T+eE++ +++++k+lG++ W++Ia++++ gRt++++k+ w+++l
  GSMUA_Achr5P03520_001  69 RGNFTKEEEDTIINLHKLLGNK-WSKIASCLP-GRTDNEIKNVWNTHL 114
                            89********************.*********.************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.3E-24766IPR009057Homeodomain-like
PROSITE profilePS5129416.751163IPR017930Myb domain
SuperFamilySSF466892.22E-3113110IPR009057Homeodomain-like
SMARTSM007173.2E-141565IPR001005SANT/Myb domain
PfamPF002491.4E-161663IPR001005SANT/Myb domain
CDDcd001671.52E-101863No hitNo description
PROSITE profilePS5129424.66364118IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.2E-2667118IPR009057Homeodomain-like
SMARTSM007172.1E-1568116IPR001005SANT/Myb domain
PfamPF002491.2E-1569114IPR001005SANT/Myb domain
CDDcd001679.99E-1171114No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 303 aa     Download sequence    Send to blast
MGRGRAPCCA KVGLNKGSWT QEEDLRLIAY IQKHGHGNWR ALPKLAGLLR CGKSCRLRWI  60
NYLRPDIKRG NFTKEEEDTI INLHKLLGNK WSKIASCLPG RTDNEIKNVW NTHLKKRLAS  120
EERRSMSVDK PDDSQSSSSS STYLSCYAHV EKDDPSLDLA DLSIEMFELP MDIWGSPQQE  180
DGTGDESSKV SPCSSSSDAM KDFLVTPDAV IQLESLSPWQ EEAAAMAELT QRNSVEAAEG  240
EDKSLEWLEY LEKELGLCGA SEEMNQGSFV RDAAEQTEME EDPVSSYFQK ELTSTYPLDL  300
RLS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C6e-291411825128MYB TRANSFORMING PROTEIN
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that regulates positively genes involved in anthocyanin biosynthesis such as A1. {ECO:0000269|PubMed:7920701}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009399414.10.0PREDICTED: myb-related protein Zm1-like
SwissprotP200244e-82MYB1_MAIZE; Myb-related protein Zm1
TrEMBLM0SVD10.0M0SVD1_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr5P03520_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP21543798
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G16490.18e-69myb domain protein 58
Publications ? help Back to Top
  1. Franken P,Schrell S,Peterson PA,Saedler H,Wienand U
    Molecular analysis of protein domain function encoded by the myb-homologous maize genes C1, Zm 1 and Zm 38.
    Plant J., 1994. 6(1): p. 21-30
    [PMID:7920701]