PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | GSMUA_Achr5P03140_001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
|
||||||||
Family | HB-other | ||||||||
Protein Properties | Length: 77aa MW: 9018.41 Da PI: 8.4871 | ||||||||
Description | HB-other family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 28.2 | 3.2e-09 | 22 | 52 | 24 | 54 |
S--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS Homeobox 24 ypsaeereeLAkklgLterqVkvWFqNrRak 54 yp+ +e+ LA+k+gLt +q+++WF N R + GSMUA_Achr5P03140_001 22 YPDDTEKLMLASKTGLTRNQISNWFINARVR 52 9****************************98 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00389 | 2.4E-4 | 1 | 60 | IPR001356 | Homeobox domain |
PROSITE profile | PS50071 | 10.511 | 22 | 56 | IPR001356 | Homeobox domain |
Pfam | PF05920 | 1.0E-12 | 22 | 52 | IPR008422 | Homeobox KN domain |
CDD | cd00086 | 2.43E-9 | 22 | 57 | No hit | No description |
SuperFamily | SSF46689 | 2.44E-13 | 22 | 63 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 3.8E-18 | 22 | 62 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 77 aa Download sequence Send to blast |
MSRLKSNKLD LTILRCVSFL LYPDDTEKLM LASKTGLTRN QISNWFINAR VRIWKPMIEE 60 MYREEFAEDT GNLSTSS |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_009399363.1 | 2e-31 | PREDICTED: BEL1-like homeodomain protein 11 isoform X2 | ||||
Swissprot | Q1PFD1 | 3e-22 | BLH11_ARATH; BEL1-like homeodomain protein 11 | ||||
TrEMBL | M0SV93 | 2e-49 | M0SV93_MUSAM; Uncharacterized protein | ||||
STRING | GSMUA_Achr5P03140_001 | 3e-50 | (Musa acuminata) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP7715 | 31 | 46 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G75430.1 | 1e-24 | BEL1-like homeodomain 11 |