PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSMUA_Achr5P03000_001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
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Family | HSF | ||||||||
Protein Properties | Length: 334aa MW: 38805.5 Da PI: 4.8169 | ||||||||
Description | HSF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HSF_DNA-bind | 116 | 2.4e-36 | 44 | 135 | 2 | 102 |
HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXX CS HSF_DNA-bind 2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkg 89 Fl+k+yei++d+++++++sws ++nsfvv++++ fa ++Lp+yFkh+nf+SFvRQLn+YgF+kv+ ++ weF+++ F +g GSMUA_Achr5P03000_001 44 FLMKTYEIVDDPSTDQVVSWSPRNNSFVVWNPHAFAMTLLPRYFKHNNFSSFVRQLNTYGFRKVDPDR---------WEFANEGFLRG 122 9********************999*****************************************999.........*********** PP XXXXXXXXXXXXX CS HSF_DNA-bind 90 kkellekikrkks 102 +++ll++ikr+k+ GSMUA_Achr5P03000_001 123 QRHLLKTIKRRKQ 135 ***********97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46785 | 8.52E-37 | 40 | 133 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
SMART | SM00415 | 7.8E-63 | 40 | 133 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
Gene3D | G3DSA:1.10.10.10 | 1.4E-39 | 40 | 133 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
Pfam | PF00447 | 3.2E-32 | 44 | 133 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 1.1E-20 | 44 | 67 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 1.1E-20 | 82 | 94 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PROSITE pattern | PS00434 | 0 | 83 | 107 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 1.1E-20 | 95 | 107 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 334 aa Download sequence Send to blast |
MDPNLNPVKE EHQEFSDASA SSTDVAMDPP KPLDGLHDVG PPPFLMKTYE IVDDPSTDQV 60 VSWSPRNNSF VVWNPHAFAM TLLPRYFKHN NFSSFVRQLN TYGFRKVDPD RWEFANEGFL 120 RGQRHLLKTI KRRKQVAYPP LQQQPLSSFL EVGEFGLEGE INRLKRDKQL LLTELVKLRQ 180 EQQNTRNHLK DMEEKVLATE QRQQQMMTFL ARFMRNPSFL QQLVEQKERI KELEEAISKK 240 RRRPIDRAPE NDDEVSSLGS LAREIQELVD ENNQEQFELQ DVKSDGELND EFWDDLLNEG 300 IDGEKGRFET ESGGNEVVNM LADKLGFLSS TNPR |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5d5u_B | 4e-26 | 42 | 133 | 27 | 129 | Heat shock factor protein 1 |
5d5v_B | 4e-26 | 42 | 133 | 27 | 129 | Heat shock factor protein 1 |
5d5v_D | 4e-26 | 42 | 133 | 27 | 129 | Heat shock factor protein 1 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 126 | 132 | LKTIKRR |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional regulator that specifically binds DNA of heat shock promoter elements (HSE). {ECO:0000250}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00371 | DAP | Transfer from AT3G22830 | Download |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By heat stress. {ECO:0000269|PubMed:18064488}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009399352.1 | 0.0 | PREDICTED: heat stress transcription factor A-2b-like | ||||
Swissprot | Q6VBB2 | 1e-127 | HFA2B_ORYSJ; Heat stress transcription factor A-2b | ||||
TrEMBL | M0SV79 | 0.0 | M0SV79_MUSAM; Uncharacterized protein | ||||
STRING | GSMUA_Achr5P03000_001 | 0.0 | (Musa acuminata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP308 | 37 | 231 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G22830.1 | 1e-100 | heat shock transcription factor A6B |
Publications ? help Back to Top | |||
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