PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr5P03000_001
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family HSF
Protein Properties Length: 334aa    MW: 38805.5 Da    PI: 4.8169
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr5P03000_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind1162.4e-36441352102
                            HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXX CS
           HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkg 89 
                            Fl+k+yei++d+++++++sws ++nsfvv++++ fa ++Lp+yFkh+nf+SFvRQLn+YgF+kv+ ++         weF+++ F +g
  GSMUA_Achr5P03000_001  44 FLMKTYEIVDDPSTDQVVSWSPRNNSFVVWNPHAFAMTLLPRYFKHNNFSSFVRQLNTYGFRKVDPDR---------WEFANEGFLRG 122
                            9********************999*****************************************999.........*********** PP

                            XXXXXXXXXXXXX CS
           HSF_DNA-bind  90 kkellekikrkks 102
                            +++ll++ikr+k+
  GSMUA_Achr5P03000_001 123 QRHLLKTIKRRKQ 135
                            ***********97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF467858.52E-3740133IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004157.8E-6340133IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene3DG3DSA:1.10.10.101.4E-3940133IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF004473.2E-3244133IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.1E-204467IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.1E-208294IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS00434083107IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.1E-2095107IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 334 aa     Download sequence    Send to blast
MDPNLNPVKE EHQEFSDASA SSTDVAMDPP KPLDGLHDVG PPPFLMKTYE IVDDPSTDQV  60
VSWSPRNNSF VVWNPHAFAM TLLPRYFKHN NFSSFVRQLN TYGFRKVDPD RWEFANEGFL  120
RGQRHLLKTI KRRKQVAYPP LQQQPLSSFL EVGEFGLEGE INRLKRDKQL LLTELVKLRQ  180
EQQNTRNHLK DMEEKVLATE QRQQQMMTFL ARFMRNPSFL QQLVEQKERI KELEEAISKK  240
RRRPIDRAPE NDDEVSSLGS LAREIQELVD ENNQEQFELQ DVKSDGELND EFWDDLLNEG  300
IDGEKGRFET ESGGNEVVNM LADKLGFLSS TNPR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B4e-264213327129Heat shock factor protein 1
5d5v_B4e-264213327129Heat shock factor protein 1
5d5v_D4e-264213327129Heat shock factor protein 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1126132LKTIKRR
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds DNA of heat shock promoter elements (HSE). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00371DAPTransfer from AT3G22830Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By heat stress. {ECO:0000269|PubMed:18064488}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009399352.10.0PREDICTED: heat stress transcription factor A-2b-like
SwissprotQ6VBB21e-127HFA2B_ORYSJ; Heat stress transcription factor A-2b
TrEMBLM0SV790.0M0SV79_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr5P03000_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP30837231
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G22830.11e-100heat shock transcription factor A6B
Publications ? help Back to Top
  1. Rezaei MK,Shobbar ZS,Shahbazi M,Abedini R,Zare S
    Glutathione S-transferase (GST) family in barley: identification of members, enzyme activity, and gene expression pattern.
    J. Plant Physiol., 2013. 170(14): p. 1277-84
    [PMID:23664583]