PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr5P02590_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family NF-YA
Protein Properties Length: 324aa    MW: 35415.1 Da    PI: 9.0609
Description NF-YA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr5P02590_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CBFB_NFYA903.1e-28157212258
              CBFB_NFYA   2 eplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 
                             p+YVNaKQ+++Il+RR++Rak+e+++k  +k rkpylheSRh hA++R Rg++GrF
  GSMUA_Achr5P02590_001 157 GPIYVNAKQFNAILRRRKARAKAEKKNKS-IKVRKPYLHESRHIHAMHRVRGCSGRF 212
                            7***************************9.**************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005213.0E-31154215IPR001289Nuclear transcription factor Y subunit A
PROSITE profilePS5115231.941155215IPR001289Nuclear transcription factor Y subunit A
PRINTSPR006167.4E-21158180IPR001289Nuclear transcription factor Y subunit A
PfamPF020452.2E-25158212IPR001289Nuclear transcription factor Y subunit A
PROSITE patternPS006860160180IPR018362CCAAT-binding factor, conserved site
PRINTSPR006167.4E-21189212IPR001289Nuclear transcription factor Y subunit A
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0016602Cellular ComponentCCAAT-binding factor complex
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 324 aa     Download sequence    Send to blast
MVISETPQAT LVPWLVGSQL IYGDPLSQLK PLSRDHTDGD DQITSVSRQM NHVIDPRRRP  60
SSGSEIPEKG TNGTVKFSIV PDPKDLGEVQ KTQQHYVPFP LQSSLRENPG CFEPGLGQSM  120
VCPSHSYVDQ FYGLYATYAA QAMHGRMLLP MAVATQGPIY VNAKQFNAIL RRRKARAKAE  180
KKNKSIKVRK PYLHESRHIH AMHRVRGCSG RFLNTKKEGN VGNGGCKVKE WMPPQPANFE  240
ASSETLHSGN LKMNSTSSRS SASGSEVTSV CAREDIGDFH IVDNPSPSGF CSHLSMMSGG  300
EGASIGHRWG AAADGCCDPD LLKI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4awl_A3e-15158218464NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT ALPHA
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009399008.10.0PREDICTED: nuclear transcription factor Y subunit A-10 isoform X1
RefseqXP_009399009.10.0PREDICTED: nuclear transcription factor Y subunit A-10 isoform X1
TrEMBLM0SV380.0M0SV38_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr5P02590_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP23073790
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06510.21e-26nuclear factor Y, subunit A10