PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSMUA_Achr5P02530_001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
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Family | TCP | ||||||||
Protein Properties | Length: 382aa MW: 41438.8 Da PI: 7.99 | ||||||||
Description | TCP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCP | 115.3 | 8.3e-36 | 70 | 180 | 2 | 89 |
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt...............ssssasece 74 g+kdrhsk++T++g+RdRRvRls+++a++f+dLqd+LG d++sk+ieWL+++a +ai el+ + + ++ ec+ GSMUA_Achr5P02530_001 70 SGGKDRHSKVYTAKGLRDRRVRLSVSTAIQFYDLQDRLGCDQPSKAIEWLIKAAAAAINELPPLdgflkpphpsgeeimEINPDVECS 157 689*****************************************************************99888888877666667785 PP TCP 75 aesssssasnsssg........k 89 +++++++++ss++ + GSMUA_Achr5P02530_001 158 YNQQQQQQHQSSKSgcsstseiS 180 55555555544444333322210 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03634 | 2.9E-34 | 71 | 180 | IPR005333 | Transcription factor, TCP |
PROSITE profile | PS51369 | 32.251 | 72 | 130 | IPR017887 | Transcription factor TCP subgroup |
Sequence ? help Back to Top |
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Protein Sequence Length: 382 aa Download sequence Send to blast |
MELEENDHAS KRSRMMCNGS QAAKIGRKQL ARDDDEDGEK RKGEGGADAN RIGSWQHYPS 60 SRIFRVSRAS GGKDRHSKVY TAKGLRDRRV RLSVSTAIQF YDLQDRLGCD QPSKAIEWLI 120 KAAAAAINEL PPLDGFLKPP HPSGEEIMEI NPDVECSYNQ QQQQQHQSSK SGCSSTSEIS 180 KGSNPNPYPN PQTPSLTTTF TELLTGGGSQ ISTADYFVQA GLFAQPQKSH QLPSSFPSQS 240 HFGNRSPMGM LPFNIAATGH HPEMQQLFLQ DHVFPVSAVA ASGDYNLNFS ISSGIAGFSR 300 GTLQSNSPAQ MPQQHHHSHN NLPRLSSTVD GSNLQFFFGS AAGSAAAATS AENQFPAGMD 360 GGLQLCYGDG YRHSDLKGKG KR |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5zkt_A | 4e-25 | 77 | 131 | 1 | 55 | Putative transcription factor PCF6 |
5zkt_B | 4e-25 | 77 | 131 | 1 | 55 | Putative transcription factor PCF6 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator. Binds the promoter core sequence 5'-GGNCC-3'. {ECO:0000269|PubMed:12000681}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009397405.1 | 1e-178 | PREDICTED: transcription factor PCF6-like | ||||
Swissprot | Q10CE8 | 9e-63 | PCF6_ORYSJ; Transcription factor PCF6 | ||||
TrEMBL | M0SV32 | 0.0 | M0SV32_MUSAM; Uncharacterized protein | ||||
STRING | GSMUA_Achr5P02530_001 | 0.0 | (Musa acuminata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP3094 | 32 | 71 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G18390.2 | 1e-36 | TEOSINTE BRANCHED 1, cycloidea and PCF transcription factor 2 |