PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr5P02450_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family ARF
Protein Properties Length: 828aa    MW: 92358 Da    PI: 6.4311
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr5P02450_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B375.94.7e-24127228199
                            EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEE CS
                     B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvv 81 
                            f+k+lt sd++++g +++p++ ae+        +++++  ++l+ +d++ ++W++++i+r++++r++lt+GW+ Fv+a++L +gD+v+
  GSMUA_Achr5P02450_001 127 FCKTLTASDTSTHGGFSVPRRAAEKVfppldysQQPPA--QELIARDLHDNEWKFRHIFRGQPKRHLLTTGWSVFVSAKRLVAGDSVL 212
                            99*****************************8544444..48********************************************** PP

                            EEE-SSSEE..EEEEE-S CS
                     B3  82 Fkldgrsefelvvkvfrk 99 
                            F   ++++ +l+++++r+
  GSMUA_Achr5P02450_001 213 FI--WNESNQLLIGIRRA 228
                            **..8889999****997 PP
2Auxin_resp121.85.1e-40253336183
             Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalk.vkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                            aahaa+t+s F+++YnPras+seFv++++k++ka++ ++vsvGmRf+m fete+ss rr++Gt++g+sdldpvrWpnS+Wrs+k
  GSMUA_Achr5P02450_001 253 AAHAAATNSRFTIFYNPRASPSEFVIPLAKYVKAVYhTRVSVGMRFRMLFETEESSVRRYMGTITGISDLDPVRWPNSHWRSVK 336
                            79*********************************9789******************************************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019361.7E-49112256IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.103.0E-42120242IPR015300DNA-binding pseudobarrel domain
CDDcd100174.07E-22126227No hitNo description
PfamPF023623.2E-22127228IPR003340B3 DNA binding domain
SMARTSM010193.1E-24127229IPR003340B3 DNA binding domain
PROSITE profilePS5086312.675127229IPR003340B3 DNA binding domain
PfamPF065077.1E-35253336IPR010525Auxin response factor
SuperFamilySSF542772.09E-7690773No hitNo description
PROSITE profilePS5174522.554695780IPR000270PB1 domain
PfamPF023094.7E-5741780IPR033389AUX/IAA domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009725Biological Processresponse to hormone
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 828 aa     Download sequence    Send to blast
MRLSSSGLPQ QTQEGEQKCL NSELWHACAG PLVCLPAIGS RVVYFPQGHS EQVAASTNKE  60
VDGHIPNYPN LPPQLICQLH NVTMHADAET DEVYAQMTLQ PLSLEEQKEP YLPAELGTPS  120
KQPTNYFCKT LTASDTSTHG GFSVPRRAAE KVFPPLDYSQ QPPAQELIAR DLHDNEWKFR  180
HIFRGQPKRH LLTTGWSVFV SAKRLVAGDS VLFIWNESNQ LLIGIRRANR PQTVMPSSVL  240
SSDSMHIGLL AAAAHAAATN SRFTIFYNPR ASPSEFVIPL AKYVKAVYHT RVSVGMRFRM  300
LFETEESSVR RYMGTITGIS DLDPVRWPNS HWRSVKVGWD ESTAGERQPR VSLWEIEPLT  360
TFPMYPSAFP LRLKRPWPSG LPSLHGGKDD DIGLNSSLMW LQDGERGIQS LNFQGFGMTP  420
WMHQRCNSSI LGLQPDMYQA MASAALQEMR AVDFSKQATS TVMQFQQHQN ITNASAPLLA  480
SQQLQSRPLQ QQEQEQLHPR SLQQQEQKPQ KQQIQQQQLS NQQIPNAMST LSQFASTSQA  540
QTLSLQKMAS LCQQQNLPET IINRMSTSAV ESIPVLQSMQ PEVKQLGSQI NFSQNAVTVP  600
PSSGRDCSLN QECGMDRQSN LLSSVNIDSS SLLVQNGMSN LRNFDNDTVS TLMPFVSTTG  660
TDYALHQALT SSNCIEDSEF LQSPNSVGVM NPQNGTFVKV YKSGSFGRSL DITKFNSYPE  720
LRSELGRLFG LEGLLEDPLR SGWQLVFVDR ENDVLLVGDD PWHEFVNNVS SIKILSPQEV  780
QQMGKEGVDL LNAATNRRIP SHTSDEYISR QESRNLSNGM ASVGSLDY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A1e-1681135741388Auxin response factor 5
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009399037.10.0PREDICTED: auxin response factor 17
SwissprotA2X1A10.0ARFF_ORYSI; Auxin response factor 6
SwissprotQ6H6V40.0ARFF_ORYSJ; Auxin response factor 6
TrEMBLM0SV240.0M0SV24_MUSAM; Auxin response factor
STRINGGSMUA_Achr5P02450_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP20123685
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G30330.10.0auxin response factor 6
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]