PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSMUA_Achr5P02190_001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
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Family | LBD | ||||||||
Protein Properties | Length: 166aa MW: 17914.5 Da PI: 8.7016 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 137.2 | 5.9e-43 | 13 | 112 | 1 | 100 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqle 88 +CaaCk+lrr+Ca dCv+ap+fpa++p+kfanvh++FGasnv+kll+++ ++r da+sslvyeA+ar+rdPvyG+vgvi++l+ q++ GSMUA_Achr5P02190_001 13 PCAACKLLRRRCAWDCVFAPHFPADEPQKFANVHRVFGASNVSKLLQEIAVQHRGDAVSSLVYEANARVRDPVYGCVGVISSLHCQVQ 100 7*************************************************************************************** PP DUF260 89 qlkaelallkee 100 l+a+la+++++ GSMUA_Achr5P02190_001 101 ALEAQLAMARAQ 112 *******99987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 25.378 | 12 | 113 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 2.2E-42 | 13 | 110 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 166 aa Download sequence Send to blast |
MKEAGRQHGT ASPCAACKLL RRRCAWDCVF APHFPADEPQ KFANVHRVFG ASNVSKLLQE 60 IAVQHRGDAV SSLVYEANAR VRDPVYGCVG VISSLHCQVQ ALEAQLAMAR AQMVRLRMLA 120 HLDLGRSPTG TGSTTTGSSS MCPSPIYTPG HGDAGQTPML SFSYER |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 8e-45 | 9 | 135 | 7 | 130 | LOB family transfactor Ramosa2.1 |
5ly0_B | 8e-45 | 9 | 135 | 7 | 130 | LOB family transfactor Ramosa2.1 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC226046 | 1e-40 | AC226046.1 Musa acuminata clone BAC MA4-72F16, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009399059.1 | 1e-122 | PREDICTED: LOB domain-containing protein 4-like | ||||
Swissprot | Q9SHE9 | 7e-56 | LBD4_ARATH; LOB domain-containing protein 4 | ||||
TrEMBL | M0SUZ8 | 1e-120 | M0SUZ8_MUSAM; Uncharacterized protein | ||||
STRING | GSMUA_Achr5P02190_001 | 1e-121 | (Musa acuminata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP882 | 38 | 150 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G31320.1 | 8e-58 | LOB domain-containing protein 4 |