PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr5P01990_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family M-type_MADS
Protein Properties Length: 347aa    MW: 37534.9 Da    PI: 8.9163
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr5P01990_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF51.51.3e-161963347
                           --SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEE CS
                 SRF-TF  3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgkly 47
                           i +k    ++fskR+ng++ KA+ LS+LC+++vav++fs+tg+ +
  GSMUA_Achr5P01990_001 19 IADKNALFISFSKRKNGVFTKASDLSTLCGTDVAVVVFSPTGRPF 63
                           566666679*********************************855 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004321.4E-24968IPR002100Transcription factor, MADS-box
PROSITE profilePS5006620.563969IPR002100Transcription factor, MADS-box
SuperFamilySSF554556.67E-211078IPR002100Transcription factor, MADS-box
PRINTSPR004041.9E-131131IPR002100Transcription factor, MADS-box
PfamPF003194.1E-201865IPR002100Transcription factor, MADS-box
PRINTSPR004041.9E-133146IPR002100Transcription factor, MADS-box
PRINTSPR004041.9E-134667IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 347 aa     Download sequence    Send to blast
MLKRKKTSKG KQKIQLQKIA DKNALFISFS KRKNGVFTKA SDLSTLCGTD VAVVVFSPTG  60
RPFSFGSPAV DPIMDRFLLG GLFPSFGSQE EQIYRRKLVH EKNGQVMDLS RQVEAERARK  120
AELEAQLKVA IEGLEWLEDL DKISLPQLDE LVESLELLKT RAQSRFKQMA SNVPSDAGTM  180
AGHAGTSGSG GTMAIDTAAG GVRPMMNPML PARGFATDPG PSSSNQVTIV DHAGASGSGG  240
MMMMGDPRWQ GFQAMLNFGL PITDYYMDTR ASSSNAFTVA GLPGASGSAG FGAIDSGWPP  300
IQAILNPVLP PNSLRMVNPY EPVVQQPNPP PVEQMDFKNI NYMYNHF
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009399291.10.0PREDICTED: agamous-like MADS-box protein AGL62
TrEMBLM0SUX80.0M0SUX8_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr5P01990_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP122436128
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60440.15e-27AGAMOUS-like 62