PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr5P01940_001
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family M-type_MADS
Protein Properties Length: 244aa    MW: 26808.5 Da    PI: 9.354
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr5P01940_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF59.25e-191765149
                           S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS
                 SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49
                           k+i+n+  r+v fskR++gi+ KA+ +S+LC+a+va++++s+ g+ y +
  GSMUA_Achr5P01940_001 17 KKIQNEDARHVCFSKRKAGIFAKASDISTLCGADVALVVYSPAGNPYSF 65
                           689*****************************************98877 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004329.9E-28968IPR002100Transcription factor, MADS-box
PROSITE profilePS5006623.605969IPR002100Transcription factor, MADS-box
SuperFamilySSF554551.01E-251084IPR002100Transcription factor, MADS-box
CDDcd002656.83E-311081No hitNo description
PRINTSPR004047.3E-171131IPR002100Transcription factor, MADS-box
PfamPF003193.4E-221865IPR002100Transcription factor, MADS-box
PRINTSPR004047.3E-173146IPR002100Transcription factor, MADS-box
PRINTSPR004047.3E-174667IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 244 aa     Download sequence    Send to blast
MAKKGVTSQG RRKIEIKKIQ NEDARHVCFS KRKAGIFAKA SDISTLCGAD VALVVYSPAG  60
NPYSFGSPAV DPVVDRFLSA SLIHGGSAHD VGRSHLTQQL NQQYMEVSKQ LEASKARKMI  120
LQERLAGVVQ SQEIEWAKNN IDHLGLEQLE RLKDAFERLK GRADARIQDI LGTGQRMALH  180
QPQPPPPPPP SMMGFGVPPV GAASSSTSYH PVWTFNTLQV PNQVEPDPYQ AQWLGSSMGY  240
MHEP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1mnm_A8e-1611851892PROTEIN (MCM1 TRANSCRIPTIONAL REGULATOR)
1mnm_B8e-1611851892PROTEIN (MCM1 TRANSCRIPTIONAL REGULATOR)
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009399293.10.0PREDICTED: agamous-like MADS-box protein AGL29
TrEMBLM0SUX30.0M0SUX3_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr5P01940_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP122436128
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24840.14e-31AGAMOUS-like 61