PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSMUA_Achr5P01940_001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 244aa MW: 26808.5 Da PI: 9.354 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 59.2 | 5e-19 | 17 | 65 | 1 | 49 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49 k+i+n+ r+v fskR++gi+ KA+ +S+LC+a+va++++s+ g+ y + GSMUA_Achr5P01940_001 17 KKIQNEDARHVCFSKRKAGIFAKASDISTLCGADVALVVYSPAGNPYSF 65 689*****************************************98877 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00432 | 9.9E-28 | 9 | 68 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 23.605 | 9 | 69 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 1.01E-25 | 10 | 84 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00265 | 6.83E-31 | 10 | 81 | No hit | No description |
PRINTS | PR00404 | 7.3E-17 | 11 | 31 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 3.4E-22 | 18 | 65 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 7.3E-17 | 31 | 46 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 7.3E-17 | 46 | 67 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 244 aa Download sequence Send to blast |
MAKKGVTSQG RRKIEIKKIQ NEDARHVCFS KRKAGIFAKA SDISTLCGAD VALVVYSPAG 60 NPYSFGSPAV DPVVDRFLSA SLIHGGSAHD VGRSHLTQQL NQQYMEVSKQ LEASKARKMI 120 LQERLAGVVQ SQEIEWAKNN IDHLGLEQLE RLKDAFERLK GRADARIQDI LGTGQRMALH 180 QPQPPPPPPP SMMGFGVPPV GAASSSTSYH PVWTFNTLQV PNQVEPDPYQ AQWLGSSMGY 240 MHEP |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1mnm_A | 8e-16 | 11 | 85 | 18 | 92 | PROTEIN (MCM1 TRANSCRIPTIONAL REGULATOR) |
1mnm_B | 8e-16 | 11 | 85 | 18 | 92 | PROTEIN (MCM1 TRANSCRIPTIONAL REGULATOR) |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009399293.1 | 0.0 | PREDICTED: agamous-like MADS-box protein AGL29 | ||||
TrEMBL | M0SUX3 | 0.0 | M0SUX3_MUSAM; Uncharacterized protein | ||||
STRING | GSMUA_Achr5P01940_001 | 0.0 | (Musa acuminata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1224 | 36 | 128 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G24840.1 | 4e-31 | AGAMOUS-like 61 |