PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr5P01930_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family MYB
Protein Properties Length: 281aa    MW: 31637.3 Da    PI: 6.9361
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr5P01930_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding52.71e-161462148
                           TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHTTTS-HHHHHHHHHHHT CS
        Myb_DNA-binding  1 rgrWTteEdellvdavkqlGgg.tWktIartmgkgRtlkqcksrwqkyl 48
                           +g+W++eEd +l+ +++q+G+g +W + ++++g++R++k+c++rw++yl
  GSMUA_Achr5P01930_001 14 KGSWSPEEDAKLKSYIEQHGTGgNWIALPHKIGLKRCGKSCRLRWLNYL 62
                           799********************************************97 PP
2Myb_DNA-binding38.62.5e-1269111246
                            SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
        Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                            g +++eEd ++ ++    G++ W+ Ia+ ++ gRt++++k++w++
  GSMUA_Achr5P01930_001  69 GGFSEEEDNIIFRLYISIGSR-WSIIASQLP-GRTDNDVKNYWNT 111
                            569******************.*********.***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129420.297966IPR017930Myb domain
SuperFamilySSF466893.19E-2611109IPR009057Homeodomain-like
SMARTSM007177.9E-131364IPR001005SANT/Myb domain
PfamPF002491.3E-151462IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.0E-241569IPR009057Homeodomain-like
CDDcd001671.40E-91662No hitNo description
SMARTSM007172.2E-1267115IPR001005SANT/Myb domain
PROSITE profilePS5129415.50867117IPR017930Myb domain
PfamPF002495.6E-1169111IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.8E-2270116IPR009057Homeodomain-like
CDDcd001674.51E-971113No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009739Biological Processresponse to gibberellin
GO:0009751Biological Processresponse to salicylic acid
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 281 aa     Download sequence    Send to blast
MGRAPCCDKA NVKKGSWSPE EDAKLKSYIE QHGTGGNWIA LPHKIGLKRC GKSCRLRWLN  60
YLRPNIKHGG FSEEEDNIIF RLYISIGSRW SIIASQLPGR TDNDVKNYWN TKLKKKFLGK  120
QRKETSAADP KQETRGDGHG DLGITGWPHQ PALTYPIDHV CHDVGQGQAS MRNEHGVRDS  180
DDGDASNSLV MPSTVPQQQI YDDPFSLAWS SLQQNSGAQA LLCPTSFSTE LDEILRFNLT  240
KMEGADRPVD ESNAATKSEE NMNWNEVSPF LYPNIYDERR L
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A1e-24141177108B-MYB
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009399081.10.0PREDICTED: transcription factor MYB82-like isoform X1
TrEMBLM0SUX20.0M0SUX2_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr5P01930_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP13538412
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G65790.19e-73myb domain protein 68