PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr5P01560_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family HB-PHD
Protein Properties Length: 658aa    MW: 73079.7 Da    PI: 4.5195
Description HB-PHD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr5P01560_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox443.7e-14506555453
                            -SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHH CS
               Homeobox   4 RttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRa 53 
                            R  f +e  + L+e F++n+yps+e++e LA++lg+t ++++ WF N R 
  GSMUA_Achr5P01560_001 506 RKYFGQETSQKLQEIFKENQYPSRETKENLAEELGVTAKRISKWFENARH 555
                            8889999*****************************************96 PP
2PHD43.47.6e-15128183151
                            SBTTTSS..TCTTSSEEEBS.SSSSEEETTTSTSSSSHHSHHSS..TBSSHHHHTT CS
                    PHD   1 rCkvCgk..sdeegelvlCd.gCkewfHlkClglkleseekpeg..ewlCeeCkek 51 
                            +C+ Cg+    ++++++lCd +C++ fH+kCl+++l ++e+p g   wlC+ C++k
  GSMUA_Achr5P01560_001 128 FCAKCGSkdLSADNDIILCDgNCDRGFHQKCLNPPLATDEIPPGdqGWLCPACDCK 183
                            699***977677********66********************9999*******985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF579031.37E-14119186IPR011011Zinc finger, FYVE/PHD-type
Gene3DG3DSA:3.30.40.101.1E-13125183IPR013083Zinc finger, RING/FYVE/PHD-type
PROSITE profilePS5001611.252126183IPR019787Zinc finger, PHD-finger
SMARTSM002491.6E-10128181IPR001965Zinc finger, PHD-type
CDDcd155041.36E-28128180No hitNo description
PfamPF006283.5E-12128183IPR019787Zinc finger, PHD-finger
PROSITE patternPS013590129180IPR019786Zinc finger, PHD-type, conserved site
PROSITE profilePS5007114.641500560IPR001356Homeobox domain
SMARTSM003898.0E-10502564IPR001356Homeobox domain
SuperFamilySSF466894.06E-13505558IPR009057Homeodomain-like
CDDcd000867.68E-13506558No hitNo description
PfamPF000469.8E-12506555IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.601.9E-14506562IPR009057Homeodomain-like
PROSITE patternPS000270535558IPR017970Homeobox, conserved site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 658 aa     Download sequence    Send to blast
MTNGKDKTSA GSSNSTAISM TKTRKKRRKG ESALNNEFLL IKKRVRYLLT RINYEQSLID  60
AYSNEGWKGQ SLEKIRPEKE LERAKSEILR CKLRIRESFR HLDSLLSEGK LEENLFDDDG  120
QIDSEAIFCA KCGSKDLSAD NDIILCDGNC DRGFHQKCLN PPLATDEIPP GDQGWLCPAC  180
DCKVDCLDLL NEFQGSDLSI EDTWEKIFPE AAVVANGNKQ FDDSNDSSDD SEDHDYNPDT  240
PEVGIEDQEE GSSSEESDSI SLSEEAPGSP RHNNFNDLGL PSDDSEDDDY DPERPDPDKD  300
VQKEGSDSSE SDFTSDSDEF CVELSKSTNI NEESSFSLSE PKLLDGSCEG RDETHESPIN  360
AKPPPVMEGE PGQVNTFPVS KKREREHLDY EKLYDEAYGK ESPVSSKDED WSEESAAKKA  420
KKDDDKREDA KLPGAKAQSA NNRRSLGIKG KVEDDNEIDL PNLDQPQVSK ATSESTPDKG  480
HENLVEQCDG DQLLGLDGIT VTYSARKYFG QETSQKLQEI FKENQYPSRE TKENLAEELG  540
VTAKRISKWF ENARHNLRVS AKGSDLPGTS GAVSDKGTDH ARTSMYKGNP FMEPSRKISE  600
SSKGNAESSA GSTEKISCKA NNHKDQVGSG AADKLKRTVD SKRQKAIARE LRKIRNGR
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
12428KKRRK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009399131.10.0PREDICTED: homeobox protein HOX1A
TrEMBLM0SUT50.0M0SUT5_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr5P01560_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP43933768
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G19510.11e-89Homeodomain-like protein with RING/FYVE/PHD-type zinc finger domain