PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr5P00590_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family ARF
Protein Properties Length: 909aa    MW: 100821 Da    PI: 6.6902
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr5P00590_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B377.91.1e-24127228199
                            EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEE CS
                     B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvv 81 
                            f+k+lt sd++++g +++p++ ae+        +++++  ++l+ +d++g++W++++i+r++++r++lt+GW+ Fv+a++L +gD+v+
  GSMUA_Achr5P00590_001 127 FCKTLTASDTSTHGGFSVPRRAAEKVfppldfsQQPPA--QELVARDLHGNEWKFRHIFRGQPKRHLLTTGWSVFVSAKRLVAGDSVL 212
                            99*****************************8544444..49********************************************** PP

                            EEE-SSSEE..EEEEE-S CS
                     B3  82 Fkldgrsefelvvkvfrk 99 
                            F   ++++ +l+++++r+
  GSMUA_Achr5P00590_001 213 FI--WNENNQLLLGIRRA 228
                            **..7888889****997 PP
2Auxin_resp120.31.5e-39253336183
             Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalk.vkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                            aahaa+t+s F+++YnPras+seFv+++ k++ka++ ++vsvGmRf+m fete+ss rr++Gt++g+sdldpvrWpnS+Wrs+k
  GSMUA_Achr5P00590_001 253 AAHAAATNSRFTIFYNPRASPSEFVISLTKYVKAVYhTRVSVGMRFRMLFETEESSVRRYMGTITGISDLDPVRWPNSHWRSVK 336
                            79*********************************9789******************************************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019363.92E-49112256IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.104.1E-43120242IPR015300DNA-binding pseudobarrel domain
CDDcd100171.54E-22126227No hitNo description
PROSITE profilePS5086313.338127229IPR003340B3 DNA binding domain
PfamPF023623.1E-23127228IPR003340B3 DNA binding domain
SMARTSM010194.7E-26127229IPR003340B3 DNA binding domain
PfamPF065072.0E-34253336IPR010525Auxin response factor
PfamPF023097.5E-9765860IPR033389AUX/IAA domain
SuperFamilySSF542773.34E-7769851No hitNo description
PROSITE profilePS5174523.382775859IPR000270PB1 domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009725Biological Processresponse to hormone
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 909 aa     Download sequence    Send to blast
MRLTSPTLTT QPQEEEPRCL NSELWHACAG PLVSLPAVGS RVVYFPQGHS EQVAASTNKE  60
VDSQIPNYPS LPPQLICQLH NVTMHADVET DEVYAQMTLQ PLSAQEQKDP YLPADLGTPS  120
KQPTNYFCKT LTASDTSTHG GFSVPRRAAE KVFPPLDFSQ QPPAQELVAR DLHGNEWKFR  180
HIFRGQPKRH LLTTGWSVFV SAKRLVAGDS VLFIWNENNQ LLLGIRRANR PQTVMPSSVL  240
SSDSMHIGLL AAAAHAAATN SRFTIFYNPR ASPSEFVISL TKYVKAVYHT RVSVGMRFRM  300
LFETEESSVR RYMGTITGIS DLDPVRWPNS HWRSVKVGWD ESTAGEKQPR VSLWEIEPLT  360
TFPMYPSSFP LRFKRPWPTG LPFFHGGRDD EFSLNSPLMW LRDGGNPALQ SLNFQGVGVT  420
PWMQPRLGTS MLALQPDMHQ TVAAVALQEM QTMDLTKQVT PAMLQFQQPQ NTTSRSAPIL  480
QSQILQHAQP QSHQPLLHTI QGNQMQSQAQ SQFLQHHLQQ GHSFAEQQQQ QQHNLQLQIP  540
EHQQFQQQRV LPAYQQVPYG AANLSQLSSS SQSQSTTLNM ISPSSQLKDF PDSNGNSVSA  600
SSVSPLDNIL HQISPEETSQ LLSLPRYAQP VTSNPWSSKR IAVESMLPSG AQSVLSQVEQ  660
IGSGQPNIPL QSVVLPPFPG RECSVNQDGS MDIQNQHMFG VNIDSSISVQ NGIRSLGTGV  720
NGTNSTNIVY AACNLLRSAG NDFPINQAVN GSNGLHESGL LQSTENVDQV NSQSGTFVKV  780
YKSGSFGRSL DITRFSSYHE LRSELGHLFG LEGQLEDPLR SGWQLVFVDR EDDVLLVGDD  840
PWQEFVNSVS CIKILSPEEV QQMGKQGVDF VNSAPIKRLQ SNGCDDYVSQ QHSRNLSAAR  900
ITSVGSFKY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A1e-1622035751388Auxin response factor 5
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009399230.10.0PREDICTED: auxin response factor 17
RefseqXP_009399231.10.0PREDICTED: auxin response factor 17
RefseqXP_009399232.10.0PREDICTED: auxin response factor 17
SwissprotQ653U30.0ARFQ_ORYSJ; Auxin response factor 17
TrEMBLM0SUI80.0M0SUI8_MUSAM; Auxin response factor
STRINGGSMUA_Achr5P00590_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP20123685
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G30330.10.0auxin response factor 6
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]