PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr5P00500_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family NAC
Protein Properties Length: 274aa    MW: 31401.4 Da    PI: 8.2006
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr5P00500_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM1744.4e-54131431128
                    NAM   1 lppGfrFhPtdeelvveyLkkkvegkk....leleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWk 84 
                            lppGfrFhP+d+elv++yL++kv+g++    ++   vi +vd++k+ePw+Lp+++  ++kewyfF  rd+kyatg+r+nrat+sgyWk
  GSMUA_Achr5P00500_001  13 LPPGFRFHPRDDELVCDYLERKVSGENgnggMHGWPVIVDVDLNKCEPWELPEMACVGDKEWYFFNLRDRKYATGQRTNRATRSGYWK 100
                            79************************98877666679***************7777799***************************** PP

                    NAM  85 atgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128
                            atgkd++v + +g lvg++ktLvfy+grapkg+ktdWvmhe+r+
  GSMUA_Achr5P00500_001 101 ATGKDRRVAR-RGMLVGMRKTLVFYRGRAPKGRKTDWVMHEFRI 143
                            *********9.999****************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.11E-612165IPR003441NAC domain
PROSITE profilePS5100556.61413166IPR003441NAC domain
PfamPF023651.3E-2714143IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 274 aa     Download sequence    Send to blast
MAMSHLSMVE ARLPPGFRFH PRDDELVCDY LERKVSGENG NGGMHGWPVI VDVDLNKCEP  60
WELPEMACVG DKEWYFFNLR DRKYATGQRT NRATRSGYWK ATGKDRRVAR RGMLVGMRKT  120
LVFYRGRAPK GRKTDWVMHE FRIEASSDPP NFSFEEDWVL CRVSSKTRGV ITKPDVKNYD  180
DDTSSSFKNT YITFDQAPRS LEGFEQVPCF SNFTAQLAAA APPVGSPDLS YYDNKFSARP  240
AFDHFPKLNP PNIIQENLGS YFGENAVSHI WNPF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A4e-50916611168Stress-induced transcription factor NAC1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that mediates auxin signaling to promote lateral root development. Activates the expression of two downstream auxin-responsive genes, DBP and AIR3. {ECO:0000269|PubMed:11114891}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by auxin.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009399243.10.0PREDICTED: NAC domain-containing protein 21/22-like
SwissprotQ84TE62e-88NAC22_ARATH; NAC domain-containing protein 21/22
TrEMBLM0SUH90.0M0SUH9_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr5P00500_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP101237138
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G56010.26e-91NAC domain containing protein 1
Publications ? help Back to Top
  1. Le Hénanff G, et al.
    Grapevine NAC1 transcription factor as a convergent node in developmental processes, abiotic stresses, and necrotrophic/biotrophic pathogen tolerance.
    J. Exp. Bot., 2013. 64(16): p. 4877-93
    [PMID:24043850]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Xiao D, et al.
    SENESCENCE-SUPPRESSED PROTEIN PHOSPHATASE Directly Interacts with the Cytoplasmic Domain of SENESCENCE-ASSOCIATED RECEPTOR-LIKE KINASE and Negatively Regulates Leaf Senescence in Arabidopsis.
    Plant Physiol., 2015. 169(2): p. 1275-91
    [PMID:26304848]
  4. Huo X,Wang C,Teng Y,Liu X
    Identification of miRNAs associated with dark-induced senescence in Arabidopsis.
    BMC Plant Biol., 2015. 15: p. 266
    [PMID:26530097]
  5. Chen X, et al.
    Auxin-Independent NAC Pathway Acts in Response to Explant-Specific Wounding and Promotes Root Tip Emergence during de Novo Root Organogenesis in Arabidopsis.
    Plant Physiol., 2016. 170(4): p. 2136-45
    [PMID:26850273]
  6. Liu C,Wang B,Li Z,Peng Z,Zhang J
    TsNAC1 Is a Key Transcription Factor in Abiotic Stress Resistance and Growth.
    Plant Physiol., 2018. 176(1): p. 742-756
    [PMID:29122985]