PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr4P32850_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family TCP
Protein Properties Length: 343aa    MW: 37185.3 Da    PI: 9.1635
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr4P32850_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP97.91.9e-3045120277
                    TCP   2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssaseceaes 77 
                             g+kdrhsk++T +g+RdRRvRls+++a++++dLqd+LG+d++sk+++WLl +a+++i++l+ +++++as+++ ++
  GSMUA_Achr4P32850_001  45 FGGKDRHSKVSTIRGLRDRRVRLSVPTAIQLYDLQDKLGVDQPSKAVDWLLAAAQHEIDKLPPLPFPPASFTQLGQ 120
                            689******************************************************************8883333 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036346.5E-2847122IPR005333Transcription factor, TCP
PROSITE profilePS5136929.01447105IPR017887Transcription factor TCP subgroup
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009965Biological Processleaf morphogenesis
GO:0030154Biological Processcell differentiation
GO:0031347Biological Processregulation of defense response
GO:0045962Biological Processpositive regulation of development, heterochronic
GO:0009507Cellular Componentchloroplast
Sequence ? help Back to Top
Protein Sequence    Length: 343 aa     Download sequence    Send to blast
MINRSREKEK ATRQEGATSD GKFPVSSRPW LGLRNPRIVR VSRAFGGKDR HSKVSTIRGL  60
RDRRVRLSVP TAIQLYDLQD KLGVDQPSKA VDWLLAAAQH EIDKLPPLPF PPASFTQLGQ  120
SFPISTAFSY HHPITSQGLA LTLHDKDVKC ADETGDCPLA LFSSAAENDG VLGNKAAELA  180
KFPGFSLSSS VRTDVTTRQV IGEGKNDDNV RSYCAQVSEA CDNSLTGSGS NLIPHASHYY  240
HSNPANSNAY EHQFGGNSSS PPSVPGSQLV FYASGGTPPM FPTYMTPPNG SSSRQSIHIP  300
SAASQDLRSS CETFLRSGSH VSVRPSQQRS SSGVHRPFDR HEN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5zkt_A2e-1952106155Putative transcription factor PCF6
5zkt_B2e-1952106155Putative transcription factor PCF6
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00326DAPTransfer from AT3G02150Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009397237.10.0PREDICTED: uncharacterized protein LOC103982142
RefseqXP_018680209.10.0PREDICTED: uncharacterized protein LOC103982142
TrEMBLM0SU470.0M0SU47_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr4P32850_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP24903584
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G02150.12e-46plastid transcription factor 1