PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSMUA_Achr4P32550_001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
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Family | LBD | ||||||||
Protein Properties | Length: 210aa MW: 22188.2 Da PI: 9.4157 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 92.6 | 4.6e-29 | 2 | 100 | 1 | 94 |
DUF260 1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilkl 83 +C++C+vlrr+C++ C+l+p++ + +q++++a+v+k+FG+s++l++l+++p +r++a++sl+yeA+ r+ +Pv Ga+g+++++ GSMUA_Achr4P32550_001 2 SCNGCRVLRRGCSATCILRPCIqcidgAGAQAHATAFVAKFFGRSTLLSFLSSVPLPRRPAAFRSLLYEACGRTINPVTGATGLLWTG 89 6*********************8888666899******************************************************** PP DUF260 84 qqqleqlkael 94 +++l+q+++ + GSMUA_Achr4P32550_001 90 NWHLCQAAVAT 100 ******98765 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 17.776 | 1 | 107 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 6.1E-26 | 2 | 98 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 210 aa Download sequence Send to blast |
MSCNGCRVLR RGCSATCILR PCIQCIDGAG AQAHATAFVA KFFGRSTLLS FLSSVPLPRR 60 PAAFRSLLYE ACGRTINPVT GATGLLWTGN WHLCQAAVAT VLGGGTIHPL PELAGAADAK 120 ELYEYQRRGV SSSSSSSSPP PRKRRRDYDA KRPPTRELYP MPESPDGGGD NKRRASTPSA 180 TSASSVTTTS EGGCGDQTAA EKPAILNLFV |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 141 | 145 | RKRRR |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009397285.1 | 1e-152 | PREDICTED: LOB domain-containing protein 37-like | ||||
Swissprot | Q9FN11 | 2e-57 | LBD37_ARATH; LOB domain-containing protein 37 | ||||
TrEMBL | M0SU17 | 1e-151 | M0SU17_MUSAM; Uncharacterized protein | ||||
STRING | GSMUA_Achr4P32550_001 | 1e-152 | (Musa acuminata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP4084 | 36 | 75 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G67420.1 | 1e-58 | LOB domain-containing protein 37 |
Publications ? help Back to Top | |||
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