PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSMUA_Achr4P32280_001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
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Family | AP2 | ||||||||
Protein Properties | Length: 423aa MW: 46512.8 Da PI: 8.072 | ||||||||
Description | AP2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 51.1 | 3.3e-16 | 154 | 213 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrd.pse.ng..kr.krfslgkfgtaeeAakaaiaarkkleg 55 s+y+GV++++++gr++A+++d ++ g ++ ++++lg ++ +e+Aa+a++ a++k++g GSMUA_Achr4P32280_001 154 SQYRGVTRHRWTGRYEAHLWDnSCKrEGqtRKgRQVYLGGYDMEEKAARAYDLAALKYWG 213 78*******************999975578446*************************98 PP | |||||||
2 | AP2 | 49.1 | 1.4e-15 | 256 | 307 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 s y+GV+++++ grW A+I +s +k +lg+f t eeAa+a++ a+ k++g GSMUA_Achr4P32280_001 256 SIYRGVTRHHQHGRWQARIGRVSG---NKDLYLGTFSTQEEAAEAYDIAAIKFRG 307 57****************999754...5************************998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 6.05E-21 | 154 | 220 | No hit | No description |
SuperFamily | SSF54171 | 5.36E-16 | 154 | 221 | IPR016177 | DNA-binding domain |
Pfam | PF00847 | 1.1E-12 | 154 | 213 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 18.479 | 155 | 221 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 3.4E-27 | 155 | 227 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 4.3E-15 | 155 | 221 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.9E-6 | 156 | 167 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 4.84E-18 | 256 | 317 | IPR016177 | DNA-binding domain |
CDD | cd00018 | 7.75E-26 | 256 | 317 | No hit | No description |
Pfam | PF00847 | 2.7E-10 | 256 | 307 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 6.4E-34 | 257 | 321 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 2.3E-18 | 257 | 315 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 19.032 | 257 | 315 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.9E-6 | 297 | 317 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 423 aa Download sequence Send to blast |
MEVPADPHHH HQSQPPPGAV SAASASFFLS PQLSSSGFSY GVSENGGYYS QLSSMPLKSN 60 GSLCLMEALS RSHEQAMVPS PSPKLEDFLG CGPNMGTHHN GDVGDGMGSG PVAAMGYGDL 120 QSLSLSMSPV SQSSCVTAPQ HASSSIDTFG QRTSQYRGVT RHRWTGRYEA HLWDNSCKRE 180 GQTRKGRQVY LGGYDMEEKA ARAYDLAALK YWGTSTHINF MLEDYREELE EMKNMSRQEY 240 VAHLRRKSSG FSRGASIYRG VTRHHQHGRW QARIGRVSGN KDLYLGTFST QEEAAEAYDI 300 AAIKFRGLNA VTNFDISRYH VEKIMASSTL LAGELARRNN NVEPSAPSSN RELNLTADNI 360 TSSYHLGSSR EGSPDRTDIS MLFAKTPPKL ISPTPLHSWM PSTQLRSALP LSHMPVFAAW 420 TDA |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator that recognizes and binds to the DNA consensus sequence 5'-CAC[AG]N[AT]TNCCNANG-3'. Required for the initiation and growth of ovules integumenta, and for the development of female gametophyte. Plays a critical role in the development of gynoecium marginal tissues (e.g. stigma, style and septa), and in the fusion of carpels and of medial ridges leading to ovule primordia. Also involved in organs initiation and development, including floral organs. Maintains the meristematic competence of cells and consequently sustains expression of cell cycle regulators during organogenesis, thus controlling the final size of each organ by controlling their cell number. Regulates INO autoinduction and expression pattern. As ANT promotes petal cell identity and mediates down-regulation of AG in flower whorl 2, it functions as a class A homeotic gene. {ECO:0000269|PubMed:10528263, ECO:0000269|PubMed:10639184, ECO:0000269|PubMed:10948255, ECO:0000269|PubMed:11041883, ECO:0000269|PubMed:12183381, ECO:0000269|PubMed:12271029, ECO:0000269|PubMed:12655002, ECO:0000269|PubMed:8742706, ECO:0000269|PubMed:8742707, ECO:0000269|PubMed:9001406, ECO:0000269|PubMed:9093862, ECO:0000269|PubMed:9118807}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009397318.1 | 0.0 | PREDICTED: AP2-like ethylene-responsive transcription factor ANT | ||||
Swissprot | Q38914 | 1e-141 | ANT_ARATH; AP2-like ethylene-responsive transcription factor ANT | ||||
TrEMBL | M0STZ0 | 0.0 | M0STZ0_MUSAM; Uncharacterized protein | ||||
STRING | GSMUA_Achr4P32280_001 | 0.0 | (Musa acuminata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP948 | 38 | 133 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G37750.1 | 1e-126 | AP2 family protein |