PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr4P32240_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family MYB
Protein Properties Length: 279aa    MW: 31030.7 Da    PI: 4.9306
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr4P32240_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding48.42.2e-151462148
                           TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHTTTS-HHHHHHHHHHHT CS
        Myb_DNA-binding  1 rgrWTteEdellvdavkqlGgg.tWktIartmgkgRtlkqcksrwqkyl 48
                           +g W+++Ed +l+ +++q+G+  +W + ++++g++R++k+c++rw++yl
  GSMUA_Achr4P32240_001 14 KGQWSPDEDAKLKSYIEQHGTCgSWIALPQKIGLKRCGKSCRLRWLNYL 62
                           799********************************************97 PP
2Myb_DNA-binding35.22.8e-1169111246
                            SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
        Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                            g +++eEd+++  +    G++ W+  a+ ++ gRt++++k++w++
  GSMUA_Achr4P32240_001  69 GGFSQEEDDIICSLYVSIGSR-WSVMASQLP-GRTDNDIKNYWNT 111
                            569******************.*********.***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129419.166966IPR017930Myb domain
SuperFamilySSF466893.02E-2412109IPR009057Homeodomain-like
SMARTSM007171.1E-101364IPR001005SANT/Myb domain
PfamPF002492.0E-141462IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.1E-231569IPR009057Homeodomain-like
CDDcd001672.85E-81762No hitNo description
SMARTSM007175.1E-1067115IPR001005SANT/Myb domain
PROSITE profilePS5129413.79967117IPR017930Myb domain
PfamPF002499.8E-1069111IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.6E-2370117IPR009057Homeodomain-like
CDDcd001678.42E-771113No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 279 aa     Download sequence    Send to blast
MGRSPCCDKA TVKKGQWSPD EDAKLKSYIE QHGTCGSWIA LPQKIGLKRC GKSCRLRWLN  60
YLRPNIKHGG FSQEEDDIIC SLYVSIGSRW SVMASQLPGR TDNDIKNYWN TRLKKKLFGE  120
RPKEPPHSRR ASACGQKQEA KGDDNGDWRE QPALVYPTDH VMGSSYGGPL VVPSSTLPRQ  180
QICDDDDDDG DLNGLAWSSL LGTPGGQALQ DPSGFSIELD EVLGFNQANL EESNVTAESE  240
KMNWNEVSPL LYSDPVIKGC EGMQQSLPQE QMTCNYDLI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A3e-22141177108B-MYB
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009397322.10.0PREDICTED: transcription factor MYB35-like
TrEMBLM0STY60.0M0STY6_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr4P32240_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP13538412
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G49690.12e-75myb domain protein 84