PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr4P32040_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family Trihelix
Protein Properties Length: 341aa    MW: 38034.8 Da    PI: 8.4642
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr4P32040_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix491.5e-1536118270
               trihelix   2 WtkqevlaLiearr.......emeerlrrgk.............lkkplWeevskkmrergferspkqCkekwenlnkrykkikegek 69 
                            W+  e+++Liea++       +      r k              ++ +W++v + ++++g+ rs++qC+++w+nl ++ykk+++ e 
  GSMUA_Achr4P32040_001  36 WSLTETMVLIEAKKmdyerraQ------RLKelprgssgigssrPQEMRWKWVEDCCWRHGCYRSQNQCNDRWDNLMRDYKKVRTYEL 117
                            ************9954433331......2223444445566655999************************************98776 PP

               trihelix  70 k 70 
                            +
  GSMUA_Achr4P32040_001 118 S 118
                            5 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500906.24928106IPR017877Myb-like domain
PfamPF138372.3E-1335116No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 341 aa     Download sequence    Send to blast
MLKKDRIEME KNALVGVGEE EEEHEDRCRE YRKGNWSLTE TMVLIEAKKM DYERRAQRLK  60
ELPRGSSGIG SSRPQEMRWK WVEDCCWRHG CYRSQNQCND RWDNLMRDYK KVRTYELSLS  120
AGGNPGLSYW KLERHERKEK NLPSNLLPEI YETLTEVVQR RAMAEKASGG GACVAAARPV  180
QEERQLGGAS ASMQHSSPGA GSQAPEPPMI APPLPPYPPS HSRPMATIDS EDSQHSVSPE  240
RKRKRGGGGG GGSSSSRSNT MELSSAISKC ASIIAEALQA GEQKEETRHK DLVSIEERKA  300
KLEESKSEMS SQSMDGLASA INKLASSILG LATDRMQKLQ K
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKM1901610.0KM190161.1 Musa balbisiana clone Tani Pa Tat Luang microsatellite BB_CT-35.1 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009398809.10.0PREDICTED: trihelix transcription factor ASR3-like
TrEMBLM0STW60.0M0STW6_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr4P32040_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP32943571
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G35640.16e-50Trihelix family protein