PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSMUA_Achr4P32010_001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
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Family | NAC | ||||||||
Protein Properties | Length: 287aa MW: 32776.6 Da PI: 6.8445 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 160.2 | 8.1e-50 | 17 | 141 | 2 | 128 |
NAM 2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkd 89 pGfrFhPtdeelv +yL++kve+k+ ++ ++ike+diyk++PwdLp+ v+a++++ yfF++r +ky+++ r+nr+t sg+Wkatg d GSMUA_Achr4P32010_001 17 LPGFRFHPTDEELVGFYLRRKVEKKTPSI-DIIKEMDIYKHDPWDLPRVVAAGDESSYFFCRRGRKYRNSIRPNRVTGSGFWKATGID 103 69************************999.99***************989999999******************************** PP NAM 90 kevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128 k++ s +g vglkk+Lv+y+g+a kg+ktdW+mhe+rl GSMUA_Achr4P32010_001 104 KPIDS-SGDCVGLKKSLVYYRGSAGKGTKTDWMMHEFRL 141 ***99.9999***************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 7.98E-54 | 15 | 169 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 51.537 | 16 | 169 | IPR003441 | NAC domain |
Pfam | PF02365 | 2.8E-25 | 18 | 141 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005992 | Biological Process | trehalose biosynthetic process | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0006561 | Biological Process | proline biosynthetic process | ||||
GO:0009718 | Biological Process | anthocyanin-containing compound biosynthetic process | ||||
GO:0010120 | Biological Process | camalexin biosynthetic process | ||||
GO:0042538 | Biological Process | hyperosmotic salinity response | ||||
GO:1900056 | Biological Process | negative regulation of leaf senescence | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 287 aa Download sequence Send to blast |
MEEMVNKREE EEEDVVLPGF RFHPTDEELV GFYLRRKVEK KTPSIDIIKE MDIYKHDPWD 60 LPRVVAAGDE SSYFFCRRGR KYRNSIRPNR VTGSGFWKAT GIDKPIDSSG DCVGLKKSLV 120 YYRGSAGKGT KTDWMMHEFR LPSGDSSIAD DTRSTQEAEI WTICRIFKRS ASYRKQSSKW 180 KASSTHKRAP ADSSCVTSSF DCDNGSDYRC CASSGYSCSQ EHNQVHGWQC NSISQPPSLY 240 SNVVQSPSTN EFFRDGDCWE ELGRMMEFMA DQSLPMSVDT VRGMYHA |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3ulx_A | 8e-50 | 4 | 175 | 3 | 174 | Stress-induced transcription factor NAC1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that binds to the 5'- RRYGCCGT-3' consensus core sequence. Central longevity regulator. Negative regulator of leaf senescence. Modulates cellular H(2)O(2) levels and enhances tolerance to various abiotic stresses through the regulation of DREB2A. {ECO:0000269|PubMed:22345491}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00310 | DAP | Transfer from AT2G43000 | Download |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Up-regulated by H(2)O(2), paraquat, ozone, 3-aminotriazole and salt stress. {ECO:0000269|PubMed:22345491}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_018680455.1 | 0.0 | PREDICTED: transcription factor JUNGBRUNNEN 1-like | ||||
Swissprot | Q9SK55 | 2e-85 | NAC42_ARATH; Transcription factor JUNGBRUNNEN 1 | ||||
TrEMBL | M0STW3 | 0.0 | M0STW3_MUSAM; Uncharacterized protein | ||||
STRING | GSMUA_Achr4P32010_001 | 0.0 | (Musa acuminata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1191 | 38 | 129 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G43000.1 | 1e-84 | NAC domain containing protein 42 |