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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSMUA_Achr4P31520_001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
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Family | TCP | ||||||||
Protein Properties | Length: 380aa MW: 40818.7 Da PI: 7.8405 | ||||||||
Description | TCP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCP | 111.3 | 1.3e-34 | 69 | 185 | 2 | 111 |
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt...............ssssasece 74 g+kdrhsk+hT++g RdRRvRls+++a++f+dLqd+LG+d++sk+ieWL+++a +ai el+ + + ++ GSMUA_Achr4P31520_001 69 SGGKDRHSKVHTARGVRDRRVRLSVSTAIQFYDLQDRLGYDQPSKAIEWLIKAAAAAISELPPLdgfpkppypnmvetmK------AN 150 689*************************************************************9887666665554331......12 PP TCP 75 aesssssasnsssgkaaksaakskksqksaasalnla 111 ++++ss +++++ + ++++ +s+ s++s+ s+l+l+ GSMUA_Achr4P31520_001 151 PDTESSYNQQQQ--HMSTKSGCSSTSETSKGSVLSLS 185 222222222221..22233334444444444444444 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03634 | 5.9E-35 | 70 | 195 | IPR005333 | Transcription factor, TCP |
PROSITE profile | PS51369 | 32.762 | 71 | 129 | IPR017887 | Transcription factor TCP subgroup |
Sequence ? help Back to Top |
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Protein Sequence Length: 380 aa Download sequence Send to blast |
MELEESNHAS KRFRVVGNGS QTAKIGRKEH REDDEEGRER KGRGGDDANG TAPWEHHLSS 60 RIFRVSRASG GKDRHSKVHT ARGVRDRRVR LSVSTAIQFY DLQDRLGYDQ PSKAIEWLIK 120 AAAAAISELP PLDGFPKPPY PNMVETMKAN PDTESSYNQQ QQHMSTKSGC SSTSETSKGS 180 VLSLSRLNPQ TSFTELLTGS GGGGGDVSNN ANATTVAAGA ENTPQESHQH PPTFSSQSHF 240 GNSSPMGMLP FNIATTGDHP EMQQLFLQDN LFPISAVAAT GDYNLSFSIS SGLAGFSRGT 300 LQSNSSAQLP QQHHHNHNHL PRLSSTVDGS NLQFFGAAAG SARAGAGAEN QYPAVCDGRL 360 QLCYGGDGYR HSDLKGKGKS |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5zkt_A | 2e-25 | 76 | 130 | 1 | 55 | Putative transcription factor PCF6 |
5zkt_B | 2e-25 | 76 | 130 | 1 | 55 | Putative transcription factor PCF6 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009397405.1 | 0.0 | PREDICTED: transcription factor PCF6-like | ||||
TrEMBL | M0STR4 | 0.0 | M0STR4_MUSAM; Uncharacterized protein | ||||
STRING | GSMUA_Achr4P31520_001 | 0.0 | (Musa acuminata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP3094 | 32 | 71 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G18390.2 | 2e-41 | TEOSINTE BRANCHED 1, cycloidea and PCF transcription factor 2 |