PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSMUA_Achr4P30990_001

Organism

Musa acuminata

Taxonomic ID

4641

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa

Family

HSF

Protein Properties

Length: 289aa MW: 31991.7 Da PI: 5.64

Description

HSF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSMUA_Achr4P30990_001	genome	CIRAD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HSF_DNA-bind	108.6	4.6e-34	28	119	2	102
HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXX CS HSF_DNA-bind 2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkg 89 F+ k+y++++d++++ +i w ++nsfvv+d+ f++++Lp++Fkhsnf+SFvRQLn+YgF+kv+ ++ weF+h sF +g GSMUA_Achr4P30990_001 28 FVLKTYRMVDDPSTDAVIAWGCDNNSFVVIDPFAFSQSLLPSHFKHSNFSSFVRQLNTYGFRKVDPDR---------WEFAHASFLRG 106 9******************999*************************************999.........******* PP XXXXXXXXXXXXX CS HSF_DNA-bind 90 kkellekikrkks 102 + +ll++i r++s GSMUA_Achr4P30990_001 107 QMHLLKQIVRRNS 119 ********986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00415	3.2E-51	24	117	IPR000232	Heat shock factor (HSF)-type, DNA-binding
Gene3D	G3DSA:1.10.10.10	6.0E-37	26	117	IPR011991	Winged helix-turn-helix DNA-binding domain
SuperFamily	SSF46785	9.66E-33	26	117	IPR011991	Winged helix-turn-helix DNA-binding domain
PRINTS	PR00056	1.3E-17	28	51	IPR000232	Heat shock factor (HSF)-type, DNA-binding
Pfam	PF00447	1.9E-29	28	117	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PRINTS	PR00056	1.3E-17	66	78	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PROSITE pattern	PS00434	0	67	91	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PRINTS	PR00056	1.3E-17	79	91	IPR000232	Heat shock factor (HSF)-type, DNA-binding

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 289 aa Download sequence Send to blast
MEDGSRSTVH HQRYRHGGGG GGPVAAPFVL KTYRMVDDPS TDAVIAWGCD NNSFVVIDPF 60 AFSQSLLPSH FKHSNFSSFV RQLNTYGFRK VDPDRWEFAH ASFLRGQMHL LKQIVRRNSG 120 CGKKKKEGGE EEENEEEEER VVAEVVRLKQ EQRRIDETVQ GMWRRVQETE RRPRQMLAFL 180 VKVAGDPKLI HRLGGPAAAT DAIEAGEKRA RLRSGADERM LEMEGGSGGC SFDGQAMAEG 240 DEEEFLGTID SVGLYGGPAW AGSEYGGMEV DVGVGSAAYP FSFHLDTGF

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5d5u_B	4e-25	17	117	17	129	Heat shock factor protein 1
5d5v_B	4e-25	17	117	17	129	Heat shock factor protein 1
5d5v_D	4e-25	17	117	17	129	Heat shock factor protein 1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional regulator that specifically binds DNA of heat shock promoter elements (HSE). {ECO:0000250}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009397457.1	0.0	PREDICTED: heat stress transcription factor C-2a-like
Swissprot	Q6EUG4	1e-81	HFC2A_ORYSJ; Heat stress transcription factor C-2a
TrEMBL	M0STL1	0.0	M0STL1_MUSAM; Uncharacterized protein
STRING	GSMUA_Achr4P30990_001	0.0	(Musa acuminata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP4471	34	70

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G24520.1	1e-62	heat shock transcription factor C1

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]