PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSMUA_Achr4P30940_001

Organism

Musa acuminata

Taxonomic ID

4641

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa

Family

NAC

Protein Properties

Length: 407aa MW: 46322.4 Da PI: 8.5671

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSMUA_Achr4P30940_001	genome	CIRAD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	113.5	2.3e-35	46	188	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkk......leleev.ikev.diykvePwdLpkkvkaeekewyfFskrdkkyatgkrknra... 77 lp+G++F+Ptd+el+ e+L++kv+++ ++++ i+ +i++++P++Lp v+ + + +fF++ +k+y+tg+rk+r+ GSMUA_Achr4P30940_001 46 LPAGVKFDPTDQELI-EHLEAKVKEEGsrshplIDEFIPtIEGEdGICYTHPEKLP-GVTRDGLSKHFFHRPSKAYTTGTRKRRKiqs 131 799**********.99**9996776553333333666646******.555666799**************8566 PP NAM 78 .....tksgyWkatgkdkevlskkgelvglkktLvfy..kgrapkgektdWvmheyrl 128 + +W++tgk+++v++ +g+++g+kk+Lv+y g+++k++kt+Wvmh+y+l GSMUA_Achr4P30940_001 132 esdlhRGETRWHKTGKTRPVMV-NGTQMGCKKILVLYtnFGKHRKPVKTNWVMHQYHL 188 6665433788********.999*******5447999**********98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	7.19E-38	40	207	IPR003441	NAC domain
PROSITE profile	PS51005	32.524	46	207	IPR003441	NAC domain
Pfam	PF02365	1.7E-16	47	188	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 407 aa Download sequence Send to blast
MNSSSIGSVS SSSLIDAKLR EHPVCGSIRC PSCGHKLDRN LGWVGLPAGV KFDPTDQELI 60 EHLEAKVKEE GSRSHPLIDE FIPTIEGEDG ICYTHPEKLP GVTRDGLSKH FFHRPSKAYT 120 TGTRKRRKIQ SESDLHRGET RWHKTGKTRP VMVNGTQMGC KKILVLYTNF GKHRKPVKTN 180 WVMHQYHLGE LEEEKDGELV VSKVFYQIQP RQWSDKSAAA VEGMSQRRDS EVLSKRDEYS 240 YSSMGMHQHV KPDNFIFAPF AEGFNEVISP QAFTNTLVES WEKRKGFELQ PQQQQQWRMA 300 TATAAFHSRR PPMNPISKFV PTPLQQTSIV LEDPYQVPRM LLQPDKFLVW QSSLQQKLDH 360 HRSTSGLEEL IMSCTSAGIK GETSTPISQE TAWQYSYWSP ANPDHHG

Sequence ? help Back to Top

Protein Sequence Length: 407 aa Download sequence Send to blast

MNSSSIGSVS SSSLIDAKLR EHPVCGSIRC PSCGHKLDRN LGWVGLPAGV KFDPTDQELI  60
EHLEAKVKEE GSRSHPLIDE FIPTIEGEDG ICYTHPEKLP GVTRDGLSKH FFHRPSKAYT  120
TGTRKRRKIQ SESDLHRGET RWHKTGKTRP VMVNGTQMGC KKILVLYTNF GKHRKPVKTN  180
WVMHQYHLGE LEEEKDGELV VSKVFYQIQP RQWSDKSAAA VEGMSQRRDS EVLSKRDEYS  240
YSSMGMHQHV KPDNFIFAPF AEGFNEVISP QAFTNTLVES WEKRKGFELQ PQQQQQWRMA  300
TATAAFHSRR PPMNPISKFV PTPLQQTSIV LEDPYQVPRM LLQPDKFLVW QSSLQQKLDH  360
HRSTSGLEEL IMSCTSAGIK GETSTPISQE TAWQYSYWSP ANPDHHG

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
3ulx_A	4e-13	44	188	13	140	Stress-induced transcription factor NAC1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator involved in xylem formation (PubMed:25265867, PubMed:25535195). Promotes the expression of the secondary wall-associated transcription factor MYB46 (PubMed:25265867). Functions upstream of NAC030/VND7, a master switch of xylem vessel differentiation (PubMed:25265867, PubMed:25535195). Acts as upstream regulator of NAC101/VND6 and LBD30/ASL19 (PubMed:25535195). {ECO:0000269\|PubMed:25265867, ECO:0000269\|PubMed:25535195}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018680486.1	0.0	PREDICTED: NAC domain-containing protein 73-like
Swissprot	Q9M0F8	1e-118	NAC75_ARATH; NAC domain-containing protein 75
TrEMBL	M0STK6	0.0	M0STK6_MUSAM; Uncharacterized protein
STRING	GSMUA_Achr4P30940_001	0.0	(Musa acuminata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1453	38	117

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G29230.1	1e-109	NAC domain containing protein 75

Publications ? help Back to Top
Droc G, et al. OryGenesDB: a database for rice reverse genetics. Nucleic Acids Res., 2006. 34(Database issue): p. D736-40 [PMID:16381969] Sakamoto S,Mitsuda N Reconstitution of a secondary cell wall in a secondary cell wall-deficient Arabidopsis mutant. Plant Cell Physiol., 2015. 56(2): p. 299-310 [PMID:25535195]