PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr4P30670_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family CO-like
Protein Properties Length: 367aa    MW: 40149.9 Da    PI: 6.6662
Description CO-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr4P30670_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box29.12.1e-091861340
               zf-B_box  3 erkCpeHeekelqlfCedCqqllCedClleeHkg......Htvv 40
                           +r C+ + + ++++fCe ++ +lC++C  + H+       H++v
  GSMUA_Achr4P30670_001 18 ARACDSCLRRRARWFCEADDAFLCQSCDASVHSAnplarrHRRV 61
                           578*****************************667888889877 PP
2CCT69.86.9e-24316359144
                    CCT   1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 
                            Rea+++RY+eKr+tR+F+KkirYe+RK +Ae+RpR+KGrFvkqa
  GSMUA_Achr4P30670_001 316 REARVSRYREKRRTRLFSKKIRYEVRKLNAEKRPRMKGRFVKQA 359
                            9*****************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5011911.2341663IPR000315B-box-type zinc finger
SMARTSM003369.6E-131663IPR000315B-box-type zinc finger
PfamPF006438.8E-81861IPR000315B-box-type zinc finger
CDDcd000213.45E-111963No hitNo description
PfamPF062031.3E-18316358IPR010402CCT domain
PROSITE profilePS5101716.093316358IPR010402CCT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0016020Cellular Componentmembrane
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 367 aa     Download sequence    Send to blast
MSYAEKQRSA GAVAARTARA CDSCLRRRAR WFCEADDAFL CQSCDASVHS ANPLARRHRR  60
VRLDTASCSS PSSSSSSPPT DDVSGDHSMP PWLHGFKRKP RTPRGKPGRA LAAAKVETLV  120
PDLETMSTEE NQSNEEEQLL HCVPTLDPLL IESCSQHPVD DGSPSEDDVK PALQLADFAH  180
VSAADGLAGF RPSDLDLAEF ASDMEALLGR GLDDHSFCID GLGLADATLE DDGMEHVKKP  240
SPEAATKRRP ILRLDYEAVI AAWSSNGCSP WTDGERPQFD PSDAWADFLV AEAGGGGEVQ  300
GMYQQAGHMA AVDGGREARV SRYREKRRTR LFSKKIRYEV RKLNAEKRPR MKGRFVKQAA  360
APALSCR
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1326342RRTRLFSKKIRYEVRKL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009397482.10.0PREDICTED: zinc finger protein CONSTANS-LIKE 16-like
SwissprotQ8RWD09e-91COL16_ARATH; Zinc finger protein CONSTANS-LIKE 16
TrEMBLM0STH90.0M0STH9_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr4P30670_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP32833058
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G25440.17e-67B-box type zinc finger protein with CCT domain
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]