PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSMUA_Achr4P30200_001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
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Family | G2-like | ||||||||
Protein Properties | Length: 434aa MW: 48647.3 Da PI: 5.3294 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 108.3 | 4e-34 | 216 | 270 | 1 | 55 |
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 kpr+rWtpeLHe+F++av+qLGGsekAtPk +l++mkv+gLt++hvkSHLQkYR+ GSMUA_Achr4P30200_001 216 KPRMRWTPELHECFINAVNQLGGSEKATPKGVLNIMKVEGLTIYHVKSHLQKYRT 270 79****************************************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 11.082 | 213 | 273 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 5.8E-32 | 214 | 272 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 5.55E-17 | 215 | 270 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 5.1E-26 | 216 | 270 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 2.9E-9 | 218 | 269 | IPR001005 | SANT/Myb domain |
Pfam | PF14379 | 1.3E-25 | 302 | 348 | IPR025756 | MYB-CC type transcription factor, LHEQLE-containing domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0007623 | Biological Process | circadian rhythm | ||||
GO:0016036 | Biological Process | cellular response to phosphate starvation | ||||
GO:0055063 | Biological Process | sulfate ion homeostasis | ||||
GO:0071486 | Biological Process | cellular response to high light intensity | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 434 aa Download sequence Send to blast |
MSSSLPVLPN TLEEKFPELP DPQHVPLERE IQRNPLPSQR PLFSSPSGFS PDLTFSSTLA 60 HERHTNNTPF VSRSLNAGVS LPSTYLSNME IFQVPNNFPK DPTEITWCPD SVQGMLNCSD 120 GVIMGNNQIQ NSSNKVSNDL NKQNEWWSDI MNVDWKDLFD DTTISESQPK VVYPPAQSSS 180 NISKQQPQTD QSVPCHSGEV CAVTGASSSA TTAAAKPRMR WTPELHECFI NAVNQLGGSE 240 KATPKGVLNI MKVEGLTIYH VKSHLQKYRT ARYKPDSLEG MSEKTATQSE ELPSLDLKTG 300 IDFTEALRLQ MEVQKRLHEQ LEIQRNLQLR IEEQGKYLQM MFEKQYKSTM DKTHCSSTVE 360 KPTTISSDQT HSTAKIDLPE AQNSSTDSKI TEGFRQVSNK WKMSEVEPSN EKETDALTSS 420 LPPSKHSRIN DEDS |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6j4k_A | 1e-30 | 215 | 274 | 1 | 60 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4k_B | 1e-30 | 215 | 274 | 1 | 60 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_A | 1e-30 | 215 | 274 | 1 | 60 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_C | 1e-30 | 215 | 274 | 1 | 60 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_D | 1e-30 | 215 | 274 | 1 | 60 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_F | 1e-30 | 215 | 274 | 1 | 60 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_H | 1e-30 | 215 | 274 | 1 | 60 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_J | 1e-30 | 215 | 274 | 1 | 60 | Protein PHOSPHATE STARVATION RESPONSE 1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor involved in phosphate starvation signaling. Binds to P1BS, an imperfect palindromic sequence 5'-GNATATNC-3', to promote the expression of inorganic phosphate (Pi) starvation-responsive genes. Functionally redundant with PHR1 and PHR3 in regulating Pi starvation response and Pi homeostasis. PHR2 binding to DNA is repressed redundantly by SPX1, SPX2 and SPX4 in a PI-dependent manner. {ECO:0000250|UniProtKB:Q6Z156}. | |||||
UniProt | Transcription factor involved in phosphate starvation signaling (PubMed:18263782, PubMed:26082401). Binds to P1BS, an imperfect palindromic sequence 5'-GNATATNC-3', to promote the expression of inorganic phosphate (Pi) starvation-responsive genes (PubMed:25657119, PubMed:26082401). Functionally redundant with PHR1 and PHR3 in regulating Pi starvation response and Pi homeostasis (PubMed:26082401). Involved in both systematic and local Pi-signaling pathways (PubMed:19704822). Regulates several Pi transporters (PubMed:18263782). Regulates the expression of PT2 (PubMed:20149131). Directly up-regulates SPX1 and SPX2 expression, but PHR2 binding to DNA is repressed redundantly by SPX1 and SPX2 in a PI-dependent manner (PubMed:25271318). The DNA-binding activity is also repressed by SPX4 (PubMed:24692424). Involved in root growth under Pi deprivation (PubMed:18263782). {ECO:0000269|PubMed:18263782, ECO:0000269|PubMed:19704822, ECO:0000269|PubMed:20149131, ECO:0000269|PubMed:24692424, ECO:0000269|PubMed:25271318, ECO:0000269|PubMed:25657119, ECO:0000269|PubMed:26082401}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Not regulated by Pi starvation. {ECO:0000269|PubMed:18263782, ECO:0000269|PubMed:26082401}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009397547.1 | 0.0 | PREDICTED: protein PHOSPHATE STARVATION RESPONSE 2-like isoform X1 | ||||
Refseq | XP_009397548.1 | 0.0 | PREDICTED: protein PHOSPHATE STARVATION RESPONSE 2-like isoform X1 | ||||
Refseq | XP_009397549.1 | 0.0 | PREDICTED: protein PHOSPHATE STARVATION RESPONSE 2-like isoform X1 | ||||
Refseq | XP_018681022.1 | 0.0 | PREDICTED: protein PHOSPHATE STARVATION RESPONSE 2-like isoform X1 | ||||
Swissprot | B8B5N8 | 1e-115 | PHR2_ORYSI; Protein PHOSPHATE STARVATION RESPONSE 2 | ||||
Swissprot | Q6Z156 | 1e-115 | PHR2_ORYSJ; Protein PHOSPHATE STARVATION RESPONSE 2 | ||||
TrEMBL | M0STD2 | 0.0 | M0STD2_MUSAM; Uncharacterized protein | ||||
STRING | GSMUA_Achr4P30200_001 | 0.0 | (Musa acuminata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1971 | 37 | 89 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G28610.1 | 1e-74 | phosphate starvation response 1 |