PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSMUA_Achr4P29230_001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
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Family | MYB | ||||||||
Protein Properties | Length: 204aa MW: 23318.2 Da PI: 7.7656 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 59.7 | 6.3e-19 | 18 | 65 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT++Ed+ll++ v+++Ggg+W+++++ g++R++k+c++rw +yl GSMUA_Achr4P29230_001 18 KGPWTPQEDKLLAEHVNLHGGGRWNSVSKLTGLRRSGKSCRLRWVNYL 65 79********************************************97 PP | |||||||
2 | Myb_DNA-binding | 53.9 | 4.1e-17 | 71 | 115 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rg+ T+eE+ +++++++ +G++ W++Iar ++ gRt++++k++w+++ GSMUA_Achr4P29230_001 71 RGKITPEEESIILELHASWGNR-WSAIARSLP-GRTDNDIKNYWRTH 115 8999******************.*********.************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 15.217 | 13 | 65 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 3.74E-30 | 15 | 112 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 6.9E-15 | 17 | 67 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 4.2E-18 | 18 | 65 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.2E-23 | 19 | 72 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 3.14E-11 | 20 | 65 | No hit | No description |
PROSITE profile | PS51294 | 25.396 | 66 | 120 | IPR017930 | Myb domain |
SMART | SM00717 | 1.8E-16 | 70 | 118 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 2.0E-15 | 71 | 115 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 4.1E-25 | 73 | 119 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.60E-11 | 75 | 116 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 204 aa Download sequence Send to blast |
MDGEPNRGAD AVEDRWRKGP WTPQEDKLLA EHVNLHGGGR WNSVSKLTGL RRSGKSCRLR 60 WVNYLRPDLK RGKITPEEES IILELHASWG NRWSAIARSL PGRTDNDIKN YWRTHFKKST 120 SPSKNNVEKK PKAQLLTQQQ DEEMRMTMTM NEVERVAVAH DMQQEMAYVY PFTGMLQGGS 180 PDGSISDGSS EEEVSWGGLW HLDI |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1h8a_C | 3e-26 | 6 | 120 | 7 | 128 | MYB TRANSFORMING PROTEIN |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor. {ECO:0000305}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Isoform MYB59-1 is induced by jasmonate (JA), salicylic acid (SA), gibberellic acid (GA), and ethylene. Also induced by cadmium (Cd). {ECO:0000269|PubMed:16463103, ECO:0000269|PubMed:16531467}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_018680527.1 | 1e-151 | PREDICTED: transcription factor MYB59-like | ||||
Swissprot | Q4JL84 | 2e-50 | MYB59_ARATH; Transcription factor MYB59 | ||||
TrEMBL | M0ST35 | 1e-150 | M0ST35_MUSAM; Uncharacterized protein | ||||
STRING | GSMUA_Achr4P29230_001 | 1e-150 | (Musa acuminata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP3243 | 35 | 84 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G13480.1 | 3e-69 | myb domain protein 79 |
Publications ? help Back to Top | |||
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